RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 CDH23Q9H251 3354 aa10.34□□□□□ -0.75
CLSTN3-212ENST00000541770 MROH7Q68CQ1 1323 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 PRUNE2Q8WUY3 3088 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 MYADML2A6NDP7 307 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 M0R2C6 588 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 TLR3O15455 904 aaKnown RBP10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 ASGR1P07306 291 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 EEF2P13639 858 aaKnown RBP10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 IRX5P78411 483 aaPredicted RBP10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 MCMDC2Q4G0Z9 681 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 TMEM240Q5SV17 173 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 FAM83BQ5T0W9 1011 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 AKNAD1Q5T1N1 836 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 GIMAP6Q6P9H5 292 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 ZNF365Q70YC5 407 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 SIAH1Q8IUQ4 282 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 AMOTL1Q8IY63 956 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 FAM227BQ96M60 508 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 SEC62Q99442 399 aaKnown RBP10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 NKX2-4Q9H2Z4 354 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 SPC25Q9HBM1 224 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 GOPCQ9HD26 462 aa10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 CTDP1Q9Y5B0 961 aaPredicted RBP10.33□□□□□ -0.76
CLSTN3-212ENST00000541770 CYP2D7A0A087X1C5 515 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 A0A0D9SFI3 127 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 PATL2C9JE40 543 aaKnown RBP10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 VWA5AO00534 786 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 PRKAB2O43741 272 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 PLA2G5P39877 138 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 CDK8P49336 464 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 MFAP1P55081 439 aaKnown RBP10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 NMIQ13287 307 aaPredicted RBP10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 ADGRE1Q14246 886 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 SKIV2LQ15477 1246 aaKnown RBP10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 RAB30Q15771 203 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 SNRNP48Q6IEG0 339 aaKnown RBP10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 PSRC1Q6PGN9 363 aaPredicted RBP10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 C16orf59Q7L2K0 433 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 CPXCR1Q8N123 301 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 PCSK9Q8NBP7 692 aaKnown RBP10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 KLHDC9Q8NEP7 349 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 NECAB3Q96P71 396 aaPredicted RBP10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 TSPYL2Q9H2G4 693 aaPredicted RBP10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 SLC28A3Q9HAS3 691 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 DIAPH3Q9NSV4 1193 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 TBX21Q9UL17 535 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 PPP1R9AQ9ULJ8 1098 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 SLC4A4Q9Y6R1 1079 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 MYH4Q9Y623 1939 aa10.32□□□□□ -0.76
CLSTN3-212ENST00000541770 ROBO3Q96MS0 1386 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 SPTBN5Q9NRC6 3674 aaKnown RBP10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 A0A0U1RQG5 324 aaPredicted RBP10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 GSG1L2A8MUP6 293 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 SMIM22K7EJ46 135 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 ARVCFO00192 962 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 DUSP11O75319 330 aaKnown RBP10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 SNAI1O95863 264 aaPredicted RBP10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 CHMLP26374 656 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 CYP2C18P33260 490 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 COPB2P35606 906 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 GNASQ5JWF2 1037 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 NOL8Q76FK4 1167 aaKnown RBP10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 STK11IPQ8N1F8 1099 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 RUFY2Q8WXA3 655 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 DDRGK1Q96HY6 314 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 CCDC17Q96LX7 622 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 NUP88Q99567 741 aaPredicted RBP10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 MTIF3Q9H2K0 278 aaKnown RBP10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 ZNF214Q9UL59 606 aaPredicted RBP10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 ADAMTS5Q9UNA0 930 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 ELP1O95163 1332 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 CCDC171Q6TFL3 1326 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 RAD50Q92878 1312 aa10.31□□□□□ -0.76
CLSTN3-212ENST00000541770 USP17L12C9JPN9 530 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 USP17L21D6R901 530 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 FGBP02675 491 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 KCNA4P22459 653 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 ACVR2BQ13705 512 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 CCDC144BQ3MJ40 725 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 SBK1Q52WX2 424 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 CWC27Q6UX04 472 aaKnown RBP10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 OTOP2Q7RTS6 562 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 ZNF589Q86UQ0 364 aaPredicted RBP10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 ANKRD35Q8N283 1001 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 SLF1Q9BQI6 1058 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 NACAP1Q9BZK3 213 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 KANSL2Q9H9L4 492 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 IL23AQ9NPF7 189 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 CXXC1Q9P0U4 656 aaPredicted RBP10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 ARPP21Q9UBL0 812 aaPredicted RBP10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 RIPK3Q9Y572 518 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 MYO9BQ13459 2157 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 SYNGAP1Q96PV0 1343 aa10.3□□□□□ -0.76
CLSTN3-212ENST00000541770 ZBBXA8MT70 800 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 ADCY6O43306 1168 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 CDK7P50613 346 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 RABGGTBP53611 331 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 CCL23P55773 120 aa10.29□□□□□ -0.76
CLSTN3-212ENST00000541770 BEX3Q00994 111 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms