RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 TLR9Q9NR96 1032 aa9.85□□□□□ -0.83
CHD4-208ENST00000540960 TLR7Q9NYK1 1049 aaKnown RBP9.85□□□□□ -0.83
CHD4-208ENST00000540960 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.85□□□□□ -0.83
CHD4-208ENST00000540960 UMODL1Q5DID0 1318 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 VPS13AQ96RL7 3174 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 FASNP49327 2511 aaKnown RBP9.84□□□□□ -0.83
CHD4-208ENST00000540960 C19orf67A6NJJ6 358 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 DDX11L8A8MPP1 907 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 PROB1E7EW31 1015 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 GOLIM4O00461 696 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 HOXB3P14651 431 aaPredicted RBP9.84□□□□□ -0.83
CHD4-208ENST00000540960 ARID4AP29374 1257 aaPredicted RBP9.84□□□□□ -0.83
CHD4-208ENST00000540960 IRS1P35568 1242 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 SLC4A3P48751 1232 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 TAP1Q03518 808 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 ZP2Q05996 745 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 MTMR2Q13614 643 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 GRB14Q14449 540 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 NECTIN1Q15223 517 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 ZMYM1Q5SVZ6 1142 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 LENG1Q96BZ8 264 aaPredicted RBP9.84□□□□□ -0.83
CHD4-208ENST00000540960 RMDN1Q96DB5 314 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 PUS3Q9BZE2 481 aaKnown RBP9.84□□□□□ -0.83
CHD4-208ENST00000540960 ANTXR1Q9H6X2 564 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.84□□□□□ -0.83
CHD4-208ENST00000540960 XPNPEP3Q9NQH7 507 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 DDX4Q9NQI0 724 aaKnown RBP9.84□□□□□ -0.83
CHD4-208ENST00000540960 LIMCH1Q9UPQ0 1083 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 SLC4A7Q9Y6M7 1214 aa9.84□□□□□ -0.83
CHD4-208ENST00000540960 FRAT2O75474 233 aaPredicted RBP9.83□□□□□ -0.84
CHD4-208ENST00000540960 GNAT2P19087 354 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 FGFR2P21802 821 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 NT5C2P49902 561 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 VCPP55072 806 aaKnown RBP9.83□□□□□ -0.84
CHD4-208ENST00000540960 JAG1P78504 1218 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 UBE3CQ15386 1083 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 TMEM67Q5HYA8 995 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 BMP8AQ7Z5Y6 402 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 VGLL2Q8N8G2 317 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 APPBP2Q92624 585 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 PRRX2Q99811 253 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 ZSWIM6Q9HCJ5 1215 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 RBM8AQ9Y5S9 174 aaKnown RBP9.83□□□□□ -0.84
CHD4-208ENST00000540960 SNX14Q9Y5W7 946 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 ANKRD11Q6UB99 2663 aaPredicted RBP9.83□□□□□ -0.84
CHD4-208ENST00000540960 USP24Q9UPU5 2620 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 ZNF292O60281 2723 aa9.83□□□□□ -0.84
CHD4-208ENST00000540960 MAST3O60307 1309 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 PDS5AQ29RF7 1337 aaKnown RBP9.82□□□□□ -0.84
CHD4-208ENST00000540960 H3BQ06 376 aaPredicted RBP9.82□□□□□ -0.84
CHD4-208ENST00000540960 COBLO75128 1261 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 ATP2A2P16615 1042 aaKnown RBP9.82□□□□□ -0.84
CHD4-208ENST00000540960 CDK7P50613 346 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 IRX5P78411 483 aaPredicted RBP9.82□□□□□ -0.84
CHD4-208ENST00000540960 CUL4AQ13619 759 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 SHROOM1Q2M3G4 852 aaPredicted RBP9.82□□□□□ -0.84
CHD4-208ENST00000540960 SKOR2Q2VWA4 1001 aaPredicted RBP9.82□□□□□ -0.84
CHD4-208ENST00000540960 CREB3L3Q68CJ9 461 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 BLOC1S2Q6QNY1 142 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 RUFY3Q7L099 469 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 DGLUCYQ7Z3D6 616 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 VPS37DQ86XT2 251 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 ZGPATQ8N5A5 531 aaKnown RBP9.82□□□□□ -0.84
CHD4-208ENST00000540960 GDPD5Q8WTR4 605 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 SLKQ9H2G2 1235 aaPredicted RBP9.82□□□□□ -0.84
CHD4-208ENST00000540960 STARD7Q9NQZ5 370 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 PDRG1Q9NUG6 133 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 KIF3AQ9Y496 699 aa9.82□□□□□ -0.84
CHD4-208ENST00000540960 TMEM221A6NGB7 291 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 ZBBXA8MT70 800 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 USP17L5A8MUK1 530 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 M0R296 226 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 ENTPD3O75355 529 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 PDCP20941 246 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 ACLYP53396 1101 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 BACE1P56817 501 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 IMMTQ16891 758 aaKnown RBP9.81□□□□□ -0.84
CHD4-208ENST00000540960 HERC4Q5GLZ8 1057 aaPredicted RBP9.81□□□□□ -0.84
CHD4-208ENST00000540960 OLFML2BQ68BL8 750 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 SPTY2D1Q68D10 685 aaPredicted RBP9.81□□□□□ -0.84
CHD4-208ENST00000540960 CCDC102BQ68D86 513 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 CERS3Q8IU89 383 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 SPATA5Q8NB90 893 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 EDAQ92838 391 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 FAM227BQ96M60 508 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 IDI2Q9BXS1 227 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 NACAP1Q9BZK3 213 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 MTIF3Q9H2K0 278 aaKnown RBP9.81□□□□□ -0.84
CHD4-208ENST00000540960 BTBD7Q9P203 1132 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 DENND2AQ9ULE3 1009 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 SUGT1Q9Y2Z0 365 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 ATP6V1DQ9Y5K8 247 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 ZNFX1Q9P2E3 1918 aaKnown RBP9.81□□□□□ -0.84
CHD4-208ENST00000540960 MYH2Q9UKX2 1941 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 ZNF536O15090 1300 aa9.81□□□□□ -0.84
CHD4-208ENST00000540960 MYH13Q9UKX3 1938 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 A0A0D9SFI3 127 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 SLC27A2O14975 620 aa9.8□□□□□ -0.84
CHD4-208ENST00000540960 TAL1P17542 331 aaPredicted RBP9.8□□□□□ -0.84
CHD4-208ENST00000540960 CASTP20810 708 aaKnown RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms