RNA–Protein interactions for RNA: ENST00000540166.5

DDB1-217, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 3,906 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-217ENST00000540166 DEFB129Q9H1M3 183 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 TDRD3Q9H7E2 651 aaKnown RBP9.72□□□□□ -0.85
DDB1-217ENST00000540166 FPGT-TNNI3KV9GXZ4 949 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 A6NNZ2 444 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 SNAP23O00161 211 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 ATP2C2O75185 946 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 ALDH1A1P00352 501 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 TIMM10P62072 90 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 KIF23Q02241 960 aaPredicted RBP9.72□□□□□ -0.85
DDB1-217ENST00000540166 CKAP4Q07065 602 aaKnown RBP9.72□□□□□ -0.85
DDB1-217ENST00000540166 TUBB8Q3ZCM7 444 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 CCDC181Q5TID7 509 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 CAPZA3Q96KX2 299 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 MXD3Q9BW11 206 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 USP40Q9NVE5 1235 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 FANCLQ9NW38 375 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 KLF18A0A0U1RQI7 1052 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 VWA3AA6NCI4 1184 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 IKBKBO14920 756 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 AOC2O75106 756 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 TTC19Q6DKK2 380 aaPredicted RBP9.72□□□□□ -0.85
DDB1-217ENST00000540166 VSTM4Q8IW00 320 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 IGSF22Q8N9C0 903 aa9.72□□□□□ -0.85
DDB1-217ENST00000540166 LLPHQ9BRT6 129 aaKnown RBP9.72□□□□□ -0.85
DDB1-217ENST00000540166 RPS6KA5O75582 802 aa9.71□□□□□ -0.85
DDB1-217ENST00000540166 ERCC3P19447 782 aa9.71□□□□□ -0.85
DDB1-217ENST00000540166 VSNL1P62760 191 aa9.71□□□□□ -0.85
DDB1-217ENST00000540166 PPFIA1Q13136 1202 aa9.71□□□□□ -0.85
DDB1-217ENST00000540166 TRIM65Q6PJ69 517 aa9.71□□□□□ -0.85
DDB1-217ENST00000540166 NUP88Q99567 741 aaPredicted RBP9.71□□□□□ -0.85
DDB1-217ENST00000540166 SPATS2LQ9NUQ6 558 aaKnown RBP9.71□□□□□ -0.85
DDB1-217ENST00000540166 PDE8BO95263 885 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 VIL1P09327 827 aaKnown RBP9.71□□□□□ -0.86
DDB1-217ENST00000540166 BCAMP50895 628 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 RASA3Q14644 834 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 RSRC2Q7L4I2 434 aaKnown RBP9.71□□□□□ -0.86
DDB1-217ENST00000540166 PCMTD1Q96MG8 357 aaPredicted RBP9.71□□□□□ -0.86
DDB1-217ENST00000540166 PLCD4Q9BRC7 762 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 GUCA1BQ9UMX6 200 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 LY75O60449 1722 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 ATP5JP18859 108 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 SCP2P22307 547 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 PEX19P40855 299 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 FKBP1BP68106 108 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 NBPF9Q3BBW0 867 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 ODF2Q5BJF6 829 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 TOGARAM2Q6ZUX3 1019 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 IQCA1Q86XH1 822 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 SPATS2Q86XZ4 545 aaKnown RBP9.71□□□□□ -0.86
DDB1-217ENST00000540166 CCDC50Q8IVM0 306 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 REM2Q8IYK8 340 aaPredicted RBP9.71□□□□□ -0.86
DDB1-217ENST00000540166 CABP5Q9NP86 173 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 KCNQ5Q9NR82 932 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 PAG1Q9NWQ8 432 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 DBNLQ9UJU6 430 aaKnown RBP9.71□□□□□ -0.86
DDB1-217ENST00000540166 L1RE1Q9UN81 338 aa9.71□□□□□ -0.86
DDB1-217ENST00000540166 MAP2K7O14733 419 aa9.7□□□□□ -0.86
DDB1-217ENST00000540166 SAFBQ15424 915 aaKnown RBP eCLIP9.7□□□□□ -0.86
DDB1-217ENST00000540166 TAF1CQ15572 869 aaPredicted RBP9.7□□□□□ -0.86
DDB1-217ENST00000540166 RTFDC1Q9BY42 306 aaPredicted RBP9.7□□□□□ -0.86
DDB1-217ENST00000540166 PUS3Q9BZE2 481 aaKnown RBP9.7□□□□□ -0.86
DDB1-217ENST00000540166 PFKFB2O60825 505 aa9.7□□□□□ -0.86
DDB1-217ENST00000540166 PLCG2P16885 1265 aa9.7□□□□□ -0.86
DDB1-217ENST00000540166 MAP3K12Q12852 859 aa9.7□□□□□ -0.86
DDB1-217ENST00000540166 SLC35F6Q8N357 371 aa9.7□□□□□ -0.86
DDB1-217ENST00000540166 NSUN7Q8NE18 718 aaKnown RBP9.7□□□□□ -0.86
DDB1-217ENST00000540166 IL17RAQ96F46 866 aa9.7□□□□□ -0.86
DDB1-217ENST00000540166 JADE2Q9NQC1 790 aa9.7□□□□□ -0.86
DDB1-217ENST00000540166 NFE2L3Q9Y4A8 694 aa9.7□□□□□ -0.86
DDB1-217ENST00000540166 MYH14Q7Z406 1995 aaKnown RBP9.7□□□□□ -0.86
DDB1-217ENST00000540166 FMNL1O95466 1100 aaPredicted RBP9.7□□□□□ -0.86
DDB1-217ENST00000540166 CHGBP05060 677 aa9.7□□□□□ -0.86
DDB1-217ENST00000540166 CRKP46108 304 aa9.7□□□□□ -0.86
DDB1-217ENST00000540166 COL9A3Q14050 684 aaPredicted RBP9.7□□□□□ -0.86
DDB1-217ENST00000540166 ZKSCAN8Q15776 578 aaPredicted RBP9.7□□□□□ -0.86
DDB1-217ENST00000540166 ANKRD13AQ8IZ07 590 aa9.7□□□□□ -0.86
DDB1-217ENST00000540166 IRX2Q9BZI1 471 aaPredicted RBP9.7□□□□□ -0.86
DDB1-217ENST00000540166 SRCAPQ6ZRS2 3230 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 MATR3P43243 847 aaKnown RBP eCLIP9.69□□□□□ -0.86
DDB1-217ENST00000540166 KBTBD3Q8NAB2 608 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 OTUD5Q96G74 571 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 BPIFA3Q9BQP9 254 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 ELP3Q9H9T3 547 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 ZNHIT6Q9NWK9 470 aaKnown RBP9.69□□□□□ -0.86
DDB1-217ENST00000540166 ADCY9O60503 1353 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 A0A1W2PQ27 194 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 A0A1W2PQ64 194 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 A0A1W2PQD8 194 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 RPSAP08865 295 aaKnown RBP9.69□□□□□ -0.86
DDB1-217ENST00000540166 HOXD10P28358 340 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 FMR1Q06787 632 aaKnown RBP eCLIP9.69□□□□□ -0.862e-7■■■■□ 20
DDB1-217ENST00000540166 E2F5Q15329 346 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 SNCBQ16143 134 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 LRRC24Q50LG9 513 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 GADL1Q6ZQY3 521 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 SND1Q7KZF4 910 aaKnown RBP eCLIP9.69□□□□□ -0.861e-6■■□□□ 14.4
DDB1-217ENST00000540166 SMARCC2Q8TAQ2 1214 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.69□□□□□ -0.866e-7■■■■□ 20.4
DDB1-217ENST00000540166 SCN11AQ9UI33 1791 aa9.69□□□□□ -0.86
DDB1-217ENST00000540166 MED23Q9ULK4 1368 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms