RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PDHBP11177 359 aa13.59□□□□□ -0.23
RTN3-209ENST00000538995 PPP4R3CPQ6ZMV5 832 aa13.59□□□□□ -0.23
RTN3-209ENST00000538995 RASGRP2Q7LDG7 609 aa13.59□□□□□ -0.23
RTN3-209ENST00000538995 ANKRD35Q8N283 1001 aa13.59□□□□□ -0.23
RTN3-209ENST00000538995 ARRDC4Q8NCT1 418 aa13.59□□□□□ -0.23
RTN3-209ENST00000538995 ANKS1AQ92625 1134 aa13.59□□□□□ -0.23
RTN3-209ENST00000538995 RANBP17Q9H2T7 1088 aaKnown RBP13.59□□□□□ -0.23
RTN3-209ENST00000538995 RNF146Q9NTX7 359 aa13.59□□□□□ -0.23
RTN3-209ENST00000538995 CNPY2Q9Y2B0 182 aa13.59□□□□□ -0.23
RTN3-209ENST00000538995 SGSM2O43147 1006 aa13.58□□□□□ -0.24
RTN3-209ENST00000538995 ICAM1P05362 532 aa13.58□□□□□ -0.24
RTN3-209ENST00000538995 ZNF543Q08ER8 600 aa13.58□□□□□ -0.24
RTN3-209ENST00000538995 GPATCH4Q5T3I0 446 aaKnown RBP13.58□□□□□ -0.24
RTN3-209ENST00000538995 SYDE2Q5VT97 1194 aa13.58□□□□□ -0.24
RTN3-209ENST00000538995 CENPQQ7L2Z9 268 aaPredicted RBP13.58□□□□□ -0.24
RTN3-209ENST00000538995 AGBL1Q96MI9 1066 aa13.58□□□□□ -0.24
RTN3-209ENST00000538995 HOMER2Q9NSB8 354 aa13.58□□□□□ -0.24
RTN3-209ENST00000538995 MTMR7Q9Y216 660 aa13.58□□□□□ -0.24
RTN3-209ENST00000538995 FRMPD3Q5JV73 1810 aa13.57□□□□□ -0.24
RTN3-209ENST00000538995 RANBP2P49792 3224 aaKnown RBP13.57□□□□□ -0.24
RTN3-209ENST00000538995 B4E1Z4 1266 aa13.57□□□□□ -0.24
RTN3-209ENST00000538995 ZNF865P0CJ78 1059 aaPredicted RBP13.57□□□□□ -0.24
RTN3-209ENST00000538995 RARBP10826 455 aa13.57□□□□□ -0.24
RTN3-209ENST00000538995 AKR1A1P14550 325 aa13.57□□□□□ -0.24
RTN3-209ENST00000538995 SLC4A3P48751 1232 aa13.57□□□□□ -0.24
RTN3-209ENST00000538995 HABP4Q5JVS0 413 aaKnown RBP13.57□□□□□ -0.24
RTN3-209ENST00000538995 TRERF1Q96PN7 1200 aa13.57□□□□□ -0.24
RTN3-209ENST00000538995 ZSCAN10Q96SZ4 725 aaPredicted RBP13.57□□□□□ -0.24
RTN3-209ENST00000538995 A1CFQ9NQ94 594 aaKnown RBP13.57□□□□□ -0.24
RTN3-209ENST00000538995 CCPG1Q9ULG6 757 aa13.57□□□□□ -0.24
RTN3-209ENST00000538995 U3KPZ7 1027 aaPredicted RBP13.57□□□□□ -0.24
RTN3-209ENST00000538995 KBTBD13C9JR72 458 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 POTEB2H3BUK9 544 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 ALAS1P13196 640 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 PRAMEF19Q5SWL8 479 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 TTBK2Q6IQ55 1244 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 CCDC174Q6PII3 467 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 ENAHQ8N8S7 591 aaPredicted RBP13.56□□□□□ -0.24
RTN3-209ENST00000538995 FAM133AQ8N9E0 248 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 PNMA1Q8ND90 353 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 CHMP4CQ96CF2 233 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 FGD4Q96M96 766 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 ZKSCAN3Q9BRR0 538 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 UBAC1Q9BSL1 405 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 KAT14Q9H8E8 782 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 ZSWIM5Q9P217 1185 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 COLQQ9Y215 455 aaPredicted RBP13.56□□□□□ -0.24
RTN3-209ENST00000538995 TNKSO95271 1327 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 FRMPD2Q68DX3 1309 aaPredicted RBP13.56□□□□□ -0.24
RTN3-209ENST00000538995 WDR19Q8NEZ3 1342 aa13.56□□□□□ -0.24
RTN3-209ENST00000538995 SNAI1O95863 264 aaPredicted RBP13.55□□□□□ -0.24
RTN3-209ENST00000538995 TAL1P17542 331 aaPredicted RBP13.55□□□□□ -0.24
RTN3-209ENST00000538995 SLC16A2P36021 539 aa13.55□□□□□ -0.24
RTN3-209ENST00000538995 TRDNQ13061 729 aa13.55□□□□□ -0.24
RTN3-209ENST00000538995 ASPRV1Q53RT3 343 aa13.55□□□□□ -0.24
RTN3-209ENST00000538995 CHRDL2Q6WN34 429 aa13.55□□□□□ -0.24
RTN3-209ENST00000538995 C7orf61Q8IZ16 206 aa13.55□□□□□ -0.24
RTN3-209ENST00000538995 PRO3102Q9H379 93 aa13.55□□□□□ -0.24
RTN3-209ENST00000538995 ABHD16BQ9H3Z7 469 aa13.55□□□□□ -0.24
RTN3-209ENST00000538995 GPCPD1Q9NPB8 672 aa13.55□□□□□ -0.24
RTN3-209ENST00000538995 XPNPEP3Q9NQH7 507 aa13.55□□□□□ -0.24
RTN3-209ENST00000538995 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.55□□□□□ -0.24
RTN3-209ENST00000538995 FAM184BQ9ULE4 1060 aa13.55□□□□□ -0.24
RTN3-209ENST00000538995 PLXNA1Q9UIW2 1896 aa13.55□□□□□ -0.24
RTN3-209ENST00000538995 LOC102724159A0A0B4J2E5 919 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 A0A1W2PPC1 479 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 ASB14A6NK59 587 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 CYP21A2P08686 494 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 SNAP25P60880 206 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 PTH1RQ03431 593 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 PWP2Q15269 919 aaKnown RBP13.54□□□□□ -0.24
RTN3-209ENST00000538995 LRRC41Q15345 812 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 LRRC26Q2I0M4 334 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 BMP2KLQ5H9B9 411 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 GJC2Q5T442 439 aaPredicted RBP13.54□□□□□ -0.24
RTN3-209ENST00000538995 ANO1Q5XXA6 986 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 ARMCX2Q7L311 632 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 RNF180Q86T96 592 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 SENP6Q9GZR1 1112 aaPredicted RBP13.54□□□□□ -0.24
RTN3-209ENST00000538995 MAF1Q9H063 256 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 CYP39A1Q9NYL5 469 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 ZHX1Q9UKY1 873 aaPredicted RBP13.54□□□□□ -0.24
RTN3-209ENST00000538995 TRIOBPQ9H2D6 2365 aa13.54□□□□□ -0.24
RTN3-209ENST00000538995 ZNFX1Q9P2E3 1918 aaKnown RBP13.54□□□□□ -0.24
RTN3-209ENST00000538995 ALPK3Q96L96 1907 aa13.53□□□□□ -0.24
RTN3-209ENST00000538995 CNTN2Q02246 1040 aa13.53□□□□□ -0.24
RTN3-209ENST00000538995 ACVR2BQ13705 512 aa13.53□□□□□ -0.24
RTN3-209ENST00000538995 MUM1L1Q5H9M0 696 aa13.53□□□□□ -0.24
RTN3-209ENST00000538995 IFIT1BQ5T764 474 aaKnown RBP13.53□□□□□ -0.24
RTN3-209ENST00000538995 RALYLQ86SE5 291 aaKnown RBP13.53□□□□□ -0.24
RTN3-209ENST00000538995 CCDC144CPQ8IYA2 1237 aa13.53□□□□□ -0.24
RTN3-209ENST00000538995 MAP4K1Q92918 833 aa13.53□□□□□ -0.24
RTN3-209ENST00000538995 PHF24Q9UPV7 400 aa13.53□□□□□ -0.24
RTN3-209ENST00000538995 SOWAHBA6NEL2 793 aa13.52□□□□□ -0.25
RTN3-209ENST00000538995 ADAMTS4O75173 837 aa13.52□□□□□ -0.25
RTN3-209ENST00000538995 DUSP11O75319 330 aaKnown RBP13.52□□□□□ -0.25
RTN3-209ENST00000538995 PARP1P09874 1014 aaKnown RBP13.52□□□□□ -0.25
RTN3-209ENST00000538995 SNX17Q15036 470 aa13.52□□□□□ -0.25
RTN3-209ENST00000538995 SEC23AQ15436 765 aa13.52□□□□□ -0.25
RTN3-209ENST00000538995 C1orf53Q5VUE5 145 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms