RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 KCTD2Q14681 263 aa14.93□□□□□ -0.02
CLSTN3-208ENST00000538933 OTOP2Q7RTS6 562 aa14.93□□□□□ -0.02
CLSTN3-208ENST00000538933 CERS3Q8IU89 383 aa14.93□□□□□ -0.02
CLSTN3-208ENST00000538933 SPICE1Q8N0Z3 855 aa14.93□□□□□ -0.02
CLSTN3-208ENST00000538933 MSL3Q8N5Y2 521 aaKnown RBP14.93□□□□□ -0.02
CLSTN3-208ENST00000538933 SLC43A3Q8NBI5 491 aa14.93□□□□□ -0.02
CLSTN3-208ENST00000538933 REPS2Q8NFH8 660 aa14.93□□□□□ -0.02
CLSTN3-208ENST00000538933 RIOK1Q9BRS2 568 aaKnown RBP14.93□□□□□ -0.02
CLSTN3-208ENST00000538933 CD320Q9NPF0 282 aa14.93□□□□□ -0.02
CLSTN3-208ENST00000538933 TLR7Q9NYK1 1049 aaKnown RBP14.93□□□□□ -0.02
CLSTN3-208ENST00000538933 ZNF214Q9UL59 606 aaPredicted RBP14.93□□□□□ -0.02
CLSTN3-208ENST00000538933 DNAJC25-GNG10A0A024R161 153 aa14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 A0A0U1RQG5 324 aaPredicted RBP14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 STAT3P40763 770 aa14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 PDE1AP54750 535 aa14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 GJA9P57773 515 aa14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 NKX3-2P78367 333 aa14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 PPP2R2DQ66LE6 453 aa14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 CLEC10AQ8IUN9 316 aa14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 PLEKHM2Q8IWE5 1019 aa14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 PCSK9Q8NBP7 692 aaKnown RBP14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 VCPKMTQ9H867 229 aa14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 FBXO28Q9NVF7 368 aa14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 COG5Q9UP83 839 aa14.92□□□□□ -0.02
CLSTN3-208ENST00000538933 CFAP54Q96N23 3096 aa14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 EPOPA6NHQ4 379 aa14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 VWA5AO00534 786 aa14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 MPHOSPH10O00566 681 aaKnown RBP14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 C6orf222P0C671 652 aaPredicted RBP14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 SKIV2LQ15477 1246 aaKnown RBP14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 TSHZ3Q63HK5 1081 aa14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 KRT40Q6A162 431 aa14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 TMEM179Q6ZVK1 233 aa14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 MAGEB6Q8N7X4 407 aa14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 MTIF3Q9H2K0 278 aaKnown RBP14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 GRIN2DO15399 1336 aa14.91□□□□□ -0.02
CLSTN3-208ENST00000538933 SMIM22K7EJ46 135 aa14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 WDR46O15213 610 aaKnown RBP14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 TLR3O15455 904 aaKnown RBP14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 IDH1O75874 414 aaKnown RBP14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 POLR3DP05423 398 aaPredicted RBP14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 GNASQ5JWF2 1037 aa14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 VTI1AQ96AJ9 217 aa14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 SNX27Q96L92 541 aa14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 NOC4LQ9BVI4 516 aaKnown RBP14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 WNT8AQ9H1J5 351 aa14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 BOLA2Q9H3K6 86 aa14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 HIPK3Q9H422 1215 aa14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 SLC4A7Q9Y6M7 1214 aa14.9□□□□□ -0.02
CLSTN3-208ENST00000538933 SCN5AQ14524 2016 aa14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 TRIM6-TRIM34B2RNG4 842 aa14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 MRE11P49959 708 aa14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 ACVR2BQ13705 512 aa14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 CCDC144BQ3MJ40 725 aa14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 SAMD1Q6SPF0 538 aaPredicted RBP14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 ZNF467Q7Z7K2 595 aaPredicted RBP14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 FGD4Q96M96 766 aa14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 OSBPL3Q9H4L5 887 aa14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 ANTXR1Q9H6X2 564 aa14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 ZHX1Q9UKY1 873 aaPredicted RBP14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 C5orf42Q9H799 3197 aa14.89□□□□□ -0.03
CLSTN3-208ENST00000538933 CYP2D6P10635 497 aa14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 AKR1B1P15121 316 aa14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 ATP5JP18859 108 aa14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 CCL23P55773 120 aa14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 TTC22Q5TAA0 569 aa14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 TMED8Q6PL24 325 aaPredicted RBP14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 HLA-CQ95604 372 aa14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 DNAJC2Q99543 621 aaKnown RBP14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 KATNBL1Q9H079 304 aa14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 PPP1R9AQ9ULJ8 1098 aa14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 RIPK3Q9Y572 518 aa14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 ASTN1O14525 1302 aa14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 SALL3Q9BXA9 1300 aa14.88□□□□□ -0.03
CLSTN3-208ENST00000538933 ARHGEF15O94989 841 aa14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 CA3P07451 260 aa14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 ATP2A2P16615 1042 aaKnown RBP14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 COPB2P35606 906 aa14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 RILPL2Q969X0 211 aa14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 DYNLL2Q96FJ2 89 aa14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 AGBL1Q96MI9 1066 aa14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 TRPV6Q9H1D0 765 aa14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 ABHD16BQ9H3Z7 469 aa14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 CERS4Q9HA82 394 aa14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 ARHGEF10LQ9HCE6 1279 aa14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 MCM9Q9NXL9 1143 aa14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 BAZ2AQ9UIF9 1905 aaKnown RBP14.87□□□□□ -0.03
CLSTN3-208ENST00000538933 PRR33A8MZF0 331 aa14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 GTPBP6O43824 516 aaPredicted RBP14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 LPXNO60711 386 aa14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 BEX3Q00994 111 aa14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 ICA1Q05084 483 aa14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 TTLL4Q14679 1199 aa14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 TMEM67Q5HYA8 995 aa14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 RPUSD2Q8IZ73 545 aaKnown RBP14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 PI4K2BQ8TCG2 481 aa14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 SH2D4AQ9H788 454 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms