RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 ZNF526Q8TF50 670 aaPredicted RBP4.82□□□□□ -1.64
SKA3-207ENST00000536239 TMEM74Q96NL1 305 aa4.82□□□□□ -1.64
SKA3-207ENST00000536239 ARID3AQ99856 593 aa4.82□□□□□ -1.64
SKA3-207ENST00000536239 SMPD4Q9NXE4 827 aa4.82□□□□□ -1.64
SKA3-207ENST00000536239 DUSP10Q9Y6W6 482 aa4.82□□□□□ -1.64
SKA3-207ENST00000536239 SH3D21A4FU49 640 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 MEIS1O00470 390 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 ITGB3P05106 788 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 CTSHP09668 335 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 ATF2P15336 505 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 VAV1P15498 845 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 GBP2P32456 591 aaPredicted RBP4.81□□□□□ -1.64
SKA3-207ENST00000536239 CTSKP43235 329 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 HTRA3P83110 453 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 MVKQ03426 396 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 RELL1Q8IUW5 271 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 SLC16A11Q8NCK7 471 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 FBXO27Q8NI29 283 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 AP5S1Q9NUS5 200 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 GMIPQ9P107 970 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 SRRDQ9UH36 339 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 IVNS1ABPQ9Y6Y0 642 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 PMF1-BGLAPU3KQ54 211 aa4.81□□□□□ -1.64
SKA3-207ENST00000536239 NOBOXO60393 691 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 POLR2BP30876 1174 aaKnown RBP4.8□□□□□ -1.64
SKA3-207ENST00000536239 CNR2P34972 360 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 FAM160A1Q05DH4 1040 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 SNAP47Q5SQN1 464 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 CDCP2Q5VXM1 449 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 PAQR3Q6TCH7 311 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 AEBP1Q8IUX7 1158 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 GOLM1Q8NBJ4 401 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 DDX1Q92499 740 aaKnown RBP4.8□□□□□ -1.64
SKA3-207ENST00000536239 ZNF512BQ96KM6 892 aaPredicted RBP4.8□□□□□ -1.64
SKA3-207ENST00000536239 RBM15Q96T37 977 aaKnown RBP eCLIP4.8□□□□□ -1.64
SKA3-207ENST00000536239 RSRP1Q9BUV0 290 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 GFOD1Q9NXC2 390 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 PARP2Q9UGN5 583 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 PLA2G2DQ9UNK4 145 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 HCFC2Q9Y5Z7 792 aa4.8□□□□□ -1.64
SKA3-207ENST00000536239 A0A1W2PQ27 194 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 A0A1W2PQ64 194 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 A0A1W2PQC6 194 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 A0A1W2PQD8 194 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 C1QTNF3-AMACRE9PGA6 284 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 SRGAP3O43295 1099 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 CLEC3AO75596 197 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 FSHBP01225 129 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 CYBBP04839 570 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 DBHP09172 617 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 DAB2P98082 770 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 DLX2Q07687 328 aaPredicted RBP4.79□□□□□ -1.64
SKA3-207ENST00000536239 EAPPQ56P03 285 aaPredicted RBP4.79□□□□□ -1.64
SKA3-207ENST00000536239 CPZQ66K79 652 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 LNPKQ9C0E8 428 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 FAN1Q9Y2M0 1017 aa4.79□□□□□ -1.64
SKA3-207ENST00000536239 MINDY4BA8MYZ0 360 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 ATE1O95260 518 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 GARTP22102 1010 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 CCNFP41002 786 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 PSMD2Q13200 908 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 PWP1Q13610 501 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 RTP2Q5QGT7 225 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 HLA-DQA1Q5Y7H0 255 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 OVOS1Q6IE37 1185 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 FAM196AQ6ZSG2 479 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 CARFQ8N187 725 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 SORCS2Q96PQ0 1159 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 KRTAP3-1Q9BYR8 98 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 RNF38Q9H0F5 515 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 CNNM2Q9H8M5 875 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 FBXL21Q9UKT6 434 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 PCDHB14Q9Y5E9 798 aa4.78□□□□□ -1.64
SKA3-207ENST00000536239 OVOL3O00110 214 aa4.77□□□□□ -1.65
SKA3-207ENST00000536239 TLR3O15455 904 aaKnown RBP4.77□□□□□ -1.65
SKA3-207ENST00000536239 NCAM1P13591 858 aa4.77□□□□□ -1.65
SKA3-207ENST00000536239 GJA9P57773 515 aa4.77□□□□□ -1.65
SKA3-207ENST00000536239 CRTC3Q6UUV7 619 aa4.77□□□□□ -1.65
SKA3-207ENST00000536239 ATG4CQ96DT6 458 aa4.77□□□□□ -1.65
SKA3-207ENST00000536239 C1QTNF3Q9BXJ4 246 aa4.77□□□□□ -1.65
SKA3-207ENST00000536239 ANTXR1Q9H6X2 564 aa4.77□□□□□ -1.65
SKA3-207ENST00000536239 BRMS1Q9HCU9 246 aa4.77□□□□□ -1.65
SKA3-207ENST00000536239 PRR13Q9NZ81 148 aa4.77□□□□□ -1.65
SKA3-207ENST00000536239 PCDHB12Q9Y5F1 795 aa4.77□□□□□ -1.65
SKA3-207ENST00000536239 ROBO2Q9HCK4 1378 aa4.77□□□□□ -1.65
SKA3-207ENST00000536239 A0A1W2PQJ5 194 aa4.76□□□□□ -1.65
SKA3-207ENST00000536239 F8W031 263 aaPredicted RBP4.76□□□□□ -1.65
SKA3-207ENST00000536239 GSNP06396 782 aa4.76□□□□□ -1.65
SKA3-207ENST00000536239 PRR5P85299 388 aa4.76□□□□□ -1.65
SKA3-207ENST00000536239 CWF19L2Q2TBE0 894 aaKnown RBP4.76□□□□□ -1.65
SKA3-207ENST00000536239 BICRALQ6AI39 1079 aa4.76□□□□□ -1.65
SKA3-207ENST00000536239 JAMLQ86YT9 394 aa4.76□□□□□ -1.65
SKA3-207ENST00000536239 TMEM192Q8IY95 271 aa4.76□□□□□ -1.65
SKA3-207ENST00000536239 NAT16Q8N8M0 369 aa4.76□□□□□ -1.65
SKA3-207ENST00000536239 SAMD11Q96NU1 681 aa4.76□□□□□ -1.65
SKA3-207ENST00000536239 MKRN2Q9H000 416 aaKnown RBP4.76□□□□□ -1.65
SKA3-207ENST00000536239 PDLIM7Q9NR12 457 aa4.76□□□□□ -1.65
SKA3-207ENST00000536239 ASGR2P07307 311 aa4.75□□□□□ -1.65
SKA3-207ENST00000536239 GSTM1P09488 218 aa4.75□□□□□ -1.65
SKA3-207ENST00000536239 ZNF20P17024 532 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms