RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 MAF1Q9H063 256 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 STARD7Q9NQZ5 370 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 CLIP2Q9UDT6 1046 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 ANAPC4Q9UJX5 808 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 ZNF536O15090 1300 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 ERC2O15083 957 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 SMARCA5O60264 1052 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 CABYRO75952 493 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 BMP3P12645 472 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 RAG1P15918 1043 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 EPHB4P54760 987 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 FPGSQ05932 587 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 PDE4BQ07343 736 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 RCSD1Q6JBY9 416 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 CCDC129Q6ZRS4 1044 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 FAM160B2Q86V87 743 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 CHURC1Q8WUH1 139 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 STAG1Q8WVM7 1258 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 GLT1D1Q96MS3 346 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 COL25A1Q9BXS0 654 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 GNEQ9Y223 722 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 MYH4Q9Y623 1939 aa13.36□□□□□ -0.27
CLSTN3-206ENST00000535668 ARVCFO00192 962 aa13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 FOXP2O15409 715 aa13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 ADCY6O43306 1168 aa13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 CD4P01730 458 aa13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 ALX1Q15699 326 aa13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 CCDC144BQ3MJ40 725 aa13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 BTNL9Q6UXG8 535 aa13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 ARMCX2Q7L311 632 aa13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 NUP88Q99567 741 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 PRDM5Q9NQX1 630 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 TMEM39AQ9NV64 488 aa13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 MYO9BQ13459 2157 aa13.35□□□□□ -0.27
CLSTN3-206ENST00000535668 A0A0U1RQG5 324 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 ASB14A6NK59 587 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 MINDY4BA8MYZ0 360 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 M0R2C6 588 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 ORC4O43929 436 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 ASGR1P07306 291 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 SLC3A2P08195 630 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 NT5C2P49902 561 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 STAT2P52630 851 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 CCDC174Q6PII3 467 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 C16orf59Q7L2K0 433 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 FAM126BQ8IXS8 530 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 ANKRD35Q8N283 1001 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 ACAD9Q9H845 621 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 SPC25Q9HBM1 224 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 ZMYM6O95789 1325 aa13.34□□□□□ -0.27
CLSTN3-206ENST00000535668 MCM3APO60318 1980 aa13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 PQBP1O60828 265 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 TDO2P48775 406 aa13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 PPARAQ07869 468 aa13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 PPIGQ13427 754 aaKnown RBP eCLIP13.33□□□□□ -0.287e-6■□□□□ 9.9
CLSTN3-206ENST00000535668 SLFN13Q68D06 897 aa13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 CCDC144CPQ8IYA2 1237 aa13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 MAFAQ8NHW3 353 aaPredicted RBP13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 RNPC3Q96LT9 517 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 RAVER2Q9HCJ3 691 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 A1CFQ9NQ94 594 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 IL17RBQ9NRM6 502 aa13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 TCP11L1Q9NUJ3 509 aa13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 PNMA2Q9UL42 364 aa13.33□□□□□ -0.28
CLSTN3-206ENST00000535668 CHD7Q9P2D1 2997 aa13.32□□□□□ -0.28
CLSTN3-206ENST00000535668 MYADML2A6NDP7 307 aa13.32□□□□□ -0.28
CLSTN3-206ENST00000535668 TSPY3P0CV98 308 aa13.32□□□□□ -0.28
CLSTN3-206ENST00000535668 TSPY8P0CW00 308 aa13.32□□□□□ -0.28
CLSTN3-206ENST00000535668 TFAP4Q01664 338 aa13.32□□□□□ -0.28
CLSTN3-206ENST00000535668 TMEM240Q5SV17 173 aa13.32□□□□□ -0.28
CLSTN3-206ENST00000535668 IQSEC1Q6DN90 963 aa13.32□□□□□ -0.28
CLSTN3-206ENST00000535668 KIFC2Q96AC6 838 aa13.32□□□□□ -0.28
CLSTN3-206ENST00000535668 ASTN1O14525 1302 aa13.32□□□□□ -0.28
CLSTN3-206ENST00000535668 TRANK1O15050 2925 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 RBM47A0AV96 593 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 SOWAHBA6NEL2 793 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 TMEM232C9JQI7 657 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 PRDM1O75626 825 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 PCP11498 1178 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 SLC1A4P43007 532 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 GNASQ5JWF2 1037 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 AKNAD1Q5T1N1 836 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 TAPT1Q6NXT6 567 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 PSRC1Q6PGN9 363 aaPredicted RBP13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 CPXCR1Q8N123 301 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 TMEM199Q8N511 208 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 HERVK_113Q902F9 699 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 LENG1Q96BZ8 264 aaPredicted RBP13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.31□□□□□ -0.282e-6■■□□□ 12.9
CLSTN3-206ENST00000535668 NAPBQ9H115 298 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 CYP39A1Q9NYL5 469 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 PCDHB15Q9Y5E8 787 aa13.31□□□□□ -0.28
CLSTN3-206ENST00000535668 APPP05067 770 aa13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 ICAM1P05362 532 aa13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 C6orf222P0C671 652 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 MX1P20591 662 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms