RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 B4DLN1 442 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 MRPL12P52815 198 aaKnown RBP15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 MCMDC2Q4G0Z9 681 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 RCSD1Q6JBY9 416 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 Q7L0L9 218 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 ARMCX2Q7L311 632 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 DCAF4Q8WV16 495 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 RILPL2Q969X0 211 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 RNPC3Q96LT9 517 aaKnown RBP15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 TOX2Q96NM4 488 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 TRERF1Q96PN7 1200 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 RNF41Q9H4P4 317 aaPredicted RBP15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 PDLIM7Q9NR12 457 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 ADD3Q9UEY8 706 aaKnown RBP15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 CCPG1Q9ULG6 757 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 RIPK3Q9Y572 518 aa15.63■□□□□ 0.09
CLSTN3-205ENST00000535452 PCP11498 1178 aaKnown RBP15.62■□□□□ 0.09
CLSTN3-205ENST00000535452 FPGSQ05932 587 aa15.62■□□□□ 0.09
CLSTN3-205ENST00000535452 CTDSPL2Q05D32 466 aa15.62■□□□□ 0.09
CLSTN3-205ENST00000535452 GNASQ5JWF2 1037 aa15.62■□□□□ 0.09
CLSTN3-205ENST00000535452 FAM109BQ6ICB4 259 aaPredicted RBP15.62■□□□□ 0.09
CLSTN3-205ENST00000535452 CCDC129Q6ZRS4 1044 aa15.62■□□□□ 0.09
CLSTN3-205ENST00000535452 CHMP4CQ96CF2 233 aa15.62■□□□□ 0.09
CLSTN3-205ENST00000535452 MTIF3Q9H2K0 278 aaKnown RBP15.62■□□□□ 0.09
CLSTN3-205ENST00000535452 ELP1O95163 1332 aa15.62■□□□□ 0.09
CLSTN3-205ENST00000535452 SYNRGQ9UMZ2 1314 aa15.62■□□□□ 0.09
CLSTN3-205ENST00000535452 RLFQ13129 1914 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 A0A0U1RQG5 324 aaPredicted RBP15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 DLL1O00548 723 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 PLA2G6O60733 806 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 TAL1P17542 331 aaPredicted RBP15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 TNFAIP2Q03169 654 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 HDAC1Q13547 482 aaPredicted RBP15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 KCNA10Q16322 511 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 CCDC144BQ3MJ40 725 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 BRDTQ58F21 947 aaPredicted RBP15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 NSMFQ6X4W1 530 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 MFSD6Q6ZSS7 791 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 KCTD1Q719H9 257 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 CCDC144CPQ8IYA2 1237 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 CRBNQ96SW2 442 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 SEZ6LQ9BYH1 1024 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 MTMR10Q9NXD2 777 aa15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 COL11A1P12107 1806 aaPredicted RBP15.61■□□□□ 0.09
CLSTN3-205ENST00000535452 DNAJC25-GNG10A0A024R161 153 aa15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 HIP1O00291 1037 aa15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 ADAMTS4O75173 837 aa15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 CABYRO75952 493 aa15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 SNAI1O95863 264 aaPredicted RBP15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 TOP1P11387 765 aaKnown RBP15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 NT5C2P49902 561 aa15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 PDE1AP54750 535 aa15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 CCDC178Q5BJE1 867 aa15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 TMEM199Q8N511 208 aa15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 OTUD7AQ8TE49 926 aaPredicted RBP15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 ANAPC4Q9UJX5 808 aa15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 MYH4Q9Y623 1939 aa15.6■□□□□ 0.09
CLSTN3-205ENST00000535452 ORC4O43929 436 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 ASGR1P07306 291 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 CST5P28325 142 aaPredicted RBP15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 SMAD3P84022 425 aaKnown RBP15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 PPIGQ13427 754 aaKnown RBP eCLIP15.59■□□□□ 0.094e-7■■□□□ 12.8
CLSTN3-205ENST00000535452 SHHQ15465 462 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 ANKRD33Q7Z3H0 272 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 IQCA1Q86XH1 822 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 ESR2Q92731 530 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 YTHDC1Q96MU7 727 aaKnown RBP15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 FAM161BQ96MY7 647 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 GPHNQ9NQX3 736 aaPredicted RBP15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 DIAPH3Q9NSV4 1193 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 PRR12Q9ULL5 1215 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 RAD50Q92878 1312 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 PARP14Q460N5 1801 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 PLXNA1Q9UIW2 1896 aa15.59■□□□□ 0.09
CLSTN3-205ENST00000535452 KIAA0355O15063 1070 aa15.58■□□□□ 0.08
CLSTN3-205ENST00000535452 ICAM1P05362 532 aa15.58■□□□□ 0.08
CLSTN3-205ENST00000535452 GJA9P57773 515 aa15.58■□□□□ 0.08
CLSTN3-205ENST00000535452 ALX1Q15699 326 aa15.58■□□□□ 0.08
CLSTN3-205ENST00000535452 B4GALNT3Q6L9W6 998 aa15.58■□□□□ 0.08
CLSTN3-205ENST00000535452 LENG1Q96BZ8 264 aaPredicted RBP15.58■□□□□ 0.08
CLSTN3-205ENST00000535452 AGBL1Q96MI9 1066 aa15.58■□□□□ 0.08
CLSTN3-205ENST00000535452 LNPKQ9C0E8 428 aa15.58■□□□□ 0.08
CLSTN3-205ENST00000535452 A1CFQ9NQ94 594 aaKnown RBP15.58■□□□□ 0.08
CLSTN3-205ENST00000535452 GREB1LQ9C091 1923 aaPredicted RBP15.58■□□□□ 0.08
CLSTN3-205ENST00000535452 ZNFX1Q9P2E3 1918 aaKnown RBP15.58■□□□□ 0.08
CLSTN3-205ENST00000535452 PTPDC1A2A3K4 754 aa15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 TRIM43BA6NCK2 446 aa15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 ZNF213O14771 459 aa15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 TIMP1P01033 207 aa15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 SYDE2Q5VT97 1194 aa15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 IQSEC1Q6DN90 963 aa15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 TLK2Q86UE8 772 aa15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 FAM133AQ8N9E0 248 aa15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 KLHDC9Q8NEP7 349 aa15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 TRIM43Q96BQ3 446 aaPredicted RBP15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 TTC14Q96N46 770 aa15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 VTA1Q9NP79 307 aa15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.57■□□□□ 0.08
CLSTN3-205ENST00000535452 CCDC171Q6TFL3 1326 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms