RNA–Protein interactions for RNA: ENST00000535290.5

CLIP1-206, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-206ENST00000535290 NKX3-2P78367 333 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 FOXK2Q01167 660 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 PTCRAQ6ISU1 281 aaPredicted RBP10.1□□□□□ -0.79
CLIP1-206ENST00000535290 HERC6Q8IVU3 1022 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 PRSS33Q8NF86 280 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 PHOSPHO2Q8TCD6 241 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 DDX11Q96FC9 970 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 FGD4Q96M96 766 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 SLC9A7Q96T83 725 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 MEIS3Q99687 375 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 ABHD16BQ9H3Z7 469 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 VCPKMTQ9H867 229 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 TMX2Q9Y320 296 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 RIPK3Q9Y572 518 aa10.1□□□□□ -0.79
CLIP1-206ENST00000535290 ZNFX1Q9P2E3 1918 aaKnown RBP10.09□□□□□ -0.79
CLIP1-206ENST00000535290 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-206ENST00000535290 LCHNA4D1U4 455 aa10.09□□□□□ -0.79
CLIP1-206ENST00000535290 WDR46O15213 610 aaKnown RBP10.09□□□□□ -0.79
CLIP1-206ENST00000535290 POLR3DP05423 398 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-206ENST00000535290 PFKMP08237 780 aa10.09□□□□□ -0.79
CLIP1-206ENST00000535290 CYP2C9P11712 490 aa10.09□□□□□ -0.79
CLIP1-206ENST00000535290 ZAP70P43403 619 aa10.09□□□□□ -0.79
CLIP1-206ENST00000535290 TTC39AQ5SRH9 613 aa10.09□□□□□ -0.79
CLIP1-206ENST00000535290 KATNBL1Q9H079 304 aa10.09□□□□□ -0.79
CLIP1-206ENST00000535290 LMCD1Q9NZU5 365 aa10.09□□□□□ -0.79
CLIP1-206ENST00000535290 CDK5RAP2Q96SN8 1893 aa10.08□□□□□ -0.8
CLIP1-206ENST00000535290 RIF1Q5UIP0 2472 aaKnown RBP10.08□□□□□ -0.8
CLIP1-206ENST00000535290 KIF28PB7ZC32 967 aa10.08□□□□□ -0.8
CLIP1-206ENST00000535290 IDH1O75874 414 aaKnown RBP10.08□□□□□ -0.8
CLIP1-206ENST00000535290 CABYRO75952 493 aa10.08□□□□□ -0.8
CLIP1-206ENST00000535290 COPB2P35606 906 aa10.08□□□□□ -0.8
CLIP1-206ENST00000535290 IER5LQ5T953 404 aa10.08□□□□□ -0.8
CLIP1-206ENST00000535290 TMEM179Q6ZVK1 233 aa10.08□□□□□ -0.8
CLIP1-206ENST00000535290 NOL8Q76FK4 1167 aaKnown RBP10.08□□□□□ -0.8
CLIP1-206ENST00000535290 ARMCX2Q7L311 632 aa10.08□□□□□ -0.8
CLIP1-206ENST00000535290 TMCO2Q7Z6W1 182 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-206ENST00000535290 ZNF467Q7Z7K2 595 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-206ENST00000535290 SPDYE1Q8NFV5 336 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-206ENST00000535290 MFSD14AQ96MC6 490 aa10.08□□□□□ -0.8
CLIP1-206ENST00000535290 DBNDD2Q9BQY9 259 aa10.08□□□□□ -0.8
CLIP1-206ENST00000535290 ALDH8A1Q9H2A2 487 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-206ENST00000535290 SUGCTQ9HAC7 445 aa10.08□□□□□ -0.8
CLIP1-206ENST00000535290 TRMT13Q9NUP7 481 aaKnown RBP10.08□□□□□ -0.8
CLIP1-206ENST00000535290 PPP1R9AQ9ULJ8 1098 aa10.08□□□□□ -0.8
CLIP1-206ENST00000535290 ZNF536O15090 1300 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 FOCADQ5VW36 1801 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 H3BQ06 376 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-206ENST00000535290 CYP2D6P10635 497 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 ACTN1P12814 892 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 AKR1B1P15121 316 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 TNFAIP2Q03169 654 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 ICA1Q05084 483 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 ZP2Q05996 745 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 MTX1Q13505 466 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 FSCN1Q16658 493 aaKnown RBP10.07□□□□□ -0.8
CLIP1-206ENST00000535290 SNRNP48Q6IEG0 339 aaKnown RBP10.07□□□□□ -0.8
CLIP1-206ENST00000535290 CCDC144CPQ8IYA2 1237 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 MAGEB6Q8N7X4 407 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 ARHGEF10LQ9HCE6 1279 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 MTUS1Q9ULD2 1270 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 HDAC5Q9UQL6 1122 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 GNEQ9Y223 722 aaKnown RBP10.07□□□□□ -0.8
CLIP1-206ENST00000535290 CFAP54Q96N23 3096 aa10.07□□□□□ -0.8
CLIP1-206ENST00000535290 CACNA1GO43497 2377 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 C19orf67A6NJJ6 358 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 DYNC1LI2O43237 492 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-206ENST00000535290 GFRA3O60609 400 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 SLC4A3P48751 1232 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 TCF15Q12870 199 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 CCDC158Q5M9N0 1113 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 FAM83BQ5T0W9 1011 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 TMEM63BQ5T3F8 832 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 TLK2Q86UE8 772 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 CERS3Q8IU89 383 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 NEK9Q8TD19 979 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 DYNLL2Q96FJ2 89 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 RIOK1Q9BRS2 568 aaKnown RBP10.06□□□□□ -0.8
CLIP1-206ENST00000535290 TEX13BQ9BXU2 312 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 PLSCR2Q9NRY7 297 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 MCM9Q9NXL9 1143 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 TECTAO75443 2155 aa10.06□□□□□ -0.8
CLIP1-206ENST00000535290 RBAK-RBAKDNI3L0D1 243 aa10.05□□□□□ -0.8
CLIP1-206ENST00000535290 IGSF3O75054 1194 aa10.05□□□□□ -0.8
CLIP1-206ENST00000535290 EEF2P13639 858 aaKnown RBP10.05□□□□□ -0.8
CLIP1-206ENST00000535290 SMPD1P17405 629 aa10.05□□□□□ -0.8
CLIP1-206ENST00000535290 PTPN5P54829 565 aa10.05□□□□□ -0.8
CLIP1-206ENST00000535290 G3BP1Q13283 466 aaKnown RBP eCLIP10.05□□□□□ -0.8
CLIP1-206ENST00000535290 PUS10Q3MIT2 529 aaKnown RBP10.05□□□□□ -0.8
CLIP1-206ENST00000535290 ZNF512BQ96KM6 892 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-206ENST00000535290 SEZ6LQ9BYH1 1024 aa10.05□□□□□ -0.8
CLIP1-206ENST00000535290 FTOQ9C0B1 505 aaKnown RBP eCLIP10.05□□□□□ -0.8
CLIP1-206ENST00000535290 SH2D4AQ9H788 454 aa10.05□□□□□ -0.8
CLIP1-206ENST00000535290 FAM86C1Q9NVL1 165 aa10.05□□□□□ -0.8
CLIP1-206ENST00000535290 DDX49Q9Y6V7 483 aaKnown RBP10.05□□□□□ -0.8
CLIP1-206ENST00000535290 MYH1P12882 1939 aa10.05□□□□□ -0.8
CLIP1-206ENST00000535290 CACNA1BQ00975 2339 aa10.05□□□□□ -0.8
CLIP1-206ENST00000535290 TNKSO95271 1327 aa10.05□□□□□ -0.8
CLIP1-206ENST00000535290 USP34Q70CQ2 3546 aa10.04□□□□□ -0.8
CLIP1-206ENST00000535290 RAD21O60216 631 aa10.04□□□□□ -0.8
CLIP1-206ENST00000535290 IQCF3P0C7M6 154 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms