RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 CCDC174Q6PII3 467 aa18.21■□□□□ 0.51
CPSF1-211ENST00000533492 MAMDC4Q6UXC1 1216 aa18.21■□□□□ 0.51
CPSF1-211ENST00000533492 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.21■□□□□ 0.51
CPSF1-211ENST00000533492 ZNF467Q7Z7K2 595 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-211ENST00000533492 RNF180Q86T96 592 aa18.21■□□□□ 0.51
CPSF1-211ENST00000533492 AGBL1Q96MI9 1066 aa18.21■□□□□ 0.51
CPSF1-211ENST00000533492 ACAD9Q9H845 621 aa18.21■□□□□ 0.51
CPSF1-211ENST00000533492 ZHX1Q9UKY1 873 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-211ENST00000533492 PRR12Q9ULL5 1215 aa18.21■□□□□ 0.51
CPSF1-211ENST00000533492 SYNGAP1Q96PV0 1343 aa18.21■□□□□ 0.51
CPSF1-211ENST00000533492 ALAS1P13196 640 aa18.2■□□□□ 0.5
CPSF1-211ENST00000533492 ADCYAP1R1P41586 468 aa18.2■□□□□ 0.5
CPSF1-211ENST00000533492 IRX6P78412 446 aaPredicted RBP18.2■□□□□ 0.5
CPSF1-211ENST00000533492 TKFCQ3LXA3 575 aa18.2■□□□□ 0.5
CPSF1-211ENST00000533492 SLC39A5Q6ZMH5 540 aa18.2■□□□□ 0.5
CPSF1-211ENST00000533492 FERMT2Q96AC1 680 aa18.2■□□□□ 0.5
CPSF1-211ENST00000533492 TRERF1Q96PN7 1200 aa18.2■□□□□ 0.5
CPSF1-211ENST00000533492 TMEM47Q9BQJ4 181 aa18.2■□□□□ 0.5
CPSF1-211ENST00000533492 RNF146Q9NTX7 359 aa18.2■□□□□ 0.5
CPSF1-211ENST00000533492 PRKAG2Q9UGJ0 569 aa18.2■□□□□ 0.5
CPSF1-211ENST00000533492 FAM184BQ9ULE4 1060 aa18.2■□□□□ 0.5
CPSF1-211ENST00000533492 POTEB2H3BUK9 544 aa18.19■□□□□ 0.5
CPSF1-211ENST00000533492 SNAI1O95863 264 aaPredicted RBP18.19■□□□□ 0.5
CPSF1-211ENST00000533492 PGK1P00558 417 aa18.19■□□□□ 0.5
CPSF1-211ENST00000533492 RTP1P59025 263 aa18.19■□□□□ 0.5
CPSF1-211ENST00000533492 SNAP25P60880 206 aa18.19■□□□□ 0.5
CPSF1-211ENST00000533492 ESR2Q92731 530 aa18.19■□□□□ 0.5
CPSF1-211ENST00000533492 TTC14Q96N46 770 aa18.19■□□□□ 0.5
CPSF1-211ENST00000533492 UBE2OQ9C0C9 1292 aaKnown RBP18.19■□□□□ 0.5
CPSF1-211ENST00000533492 ATP11BQ9Y2G3 1177 aa18.19■□□□□ 0.5
CPSF1-211ENST00000533492 ZNF536O15090 1300 aa18.19■□□□□ 0.5
CPSF1-211ENST00000533492 ACVR2BQ13705 512 aa18.18■□□□□ 0.5
CPSF1-211ENST00000533492 RASGRP2Q7LDG7 609 aa18.18■□□□□ 0.5
CPSF1-211ENST00000533492 TBC1D10CQ8IV04 446 aa18.18■□□□□ 0.5
CPSF1-211ENST00000533492 LBHD1Q9BQE6 289 aaPredicted RBP18.18■□□□□ 0.5
CPSF1-211ENST00000533492 ABHD16BQ9H3Z7 469 aa18.18■□□□□ 0.5
CPSF1-211ENST00000533492 GPCPD1Q9NPB8 672 aa18.18■□□□□ 0.5
CPSF1-211ENST00000533492 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.18■□□□□ 0.5
CPSF1-211ENST00000533492 RANBP2P49792 3224 aaKnown RBP18.17■□□□□ 0.5
CPSF1-211ENST00000533492 SLC16A2P36021 539 aa18.17■□□□□ 0.5
CPSF1-211ENST00000533492 MDM2Q00987 491 aaPredicted RBP18.17■□□□□ 0.5
CPSF1-211ENST00000533492 TTBK2Q6IQ55 1244 aa18.17■□□□□ 0.5
CPSF1-211ENST00000533492 A1CFQ9NQ94 594 aaKnown RBP18.17■□□□□ 0.5
CPSF1-211ENST00000533492 CTNNA3Q9UI47 895 aa18.17■□□□□ 0.5
CPSF1-211ENST00000533492 CCPG1Q9ULG6 757 aa18.17■□□□□ 0.5
CPSF1-211ENST00000533492 FRMPD2Q68DX3 1309 aaPredicted RBP18.17■□□□□ 0.5
CPSF1-211ENST00000533492 NT5C2P49902 561 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 CNTN2Q02246 1040 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 IMMTQ16891 758 aaKnown RBP18.16■□□□□ 0.5
CPSF1-211ENST00000533492 CCDC178Q5BJE1 867 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 SYDE2Q5VT97 1194 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 BTNL9Q6UXG8 535 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 ARMCX2Q7L311 632 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 IQCA1Q86XH1 822 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 CCDC144CPQ8IYA2 1237 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 LENG1Q96BZ8 264 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-211ENST00000533492 ZKSCAN3Q9BRR0 538 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 DSCC1Q9BVC3 393 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 PHF24Q9UPV7 400 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 DNAH12Q6ZR08 3092 aa18.16■□□□□ 0.5
CPSF1-211ENST00000533492 ASB14A6NK59 587 aa18.15■□□□□ 0.5
CPSF1-211ENST00000533492 DUSP11O75319 330 aaKnown RBP18.15■□□□□ 0.5
CPSF1-211ENST00000533492 ICAM1P05362 532 aa18.15■□□□□ 0.5
CPSF1-211ENST00000533492 PDHBP11177 359 aa18.15■□□□□ 0.5
CPSF1-211ENST00000533492 PDE4AP27815 886 aa18.15■□□□□ 0.5
CPSF1-211ENST00000533492 TTC22Q5TAA0 569 aa18.15■□□□□ 0.5
CPSF1-211ENST00000533492 NSMFQ6X4W1 530 aa18.15■□□□□ 0.5
CPSF1-211ENST00000533492 TDHQ8IZJ6 230 aa18.15■□□□□ 0.5
CPSF1-211ENST00000533492 FAM133AQ8N9E0 248 aa18.15■□□□□ 0.5
CPSF1-211ENST00000533492 FGD4Q96M96 766 aa18.15■□□□□ 0.5
CPSF1-211ENST00000533492 RANBP17Q9H2T7 1088 aaKnown RBP18.15■□□□□ 0.5
CPSF1-211ENST00000533492 SPC25Q9HBM1 224 aa18.15■□□□□ 0.5
CPSF1-211ENST00000533492 NEDD4P46934 1319 aa18.15■□□□□ 0.5
CPSF1-211ENST00000533492 KDM4AO75164 1064 aa18.14■□□□□ 0.49
CPSF1-211ENST00000533492 CCDC144BQ3MJ40 725 aa18.14■□□□□ 0.49
CPSF1-211ENST00000533492 TRIM60Q495X7 471 aa18.14■□□□□ 0.49
CPSF1-211ENST00000533492 MUM1L1Q5H9M0 696 aa18.14■□□□□ 0.49
CPSF1-211ENST00000533492 DGKHQ86XP1 1220 aa18.14■□□□□ 0.49
CPSF1-211ENST00000533492 TSEN34Q9BSV6 310 aaKnown RBP18.14■□□□□ 0.49
CPSF1-211ENST00000533492 PRDM5Q9NQX1 630 aaPredicted RBP18.14■□□□□ 0.49
CPSF1-211ENST00000533492 MCM3APO60318 1980 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 A0A1W2PQ45 241 aaPredicted RBP18.13■□□□□ 0.49
CPSF1-211ENST00000533492 A0A1W2PQY0 241 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 SOWAHBA6NEL2 793 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 B4E1Z4 1266 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 ADAMTS4O75173 837 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 ZNF543Q08ER8 600 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 SNX17Q15036 470 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 C1orf53Q5VUE5 145 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 NOL8Q76FK4 1167 aaKnown RBP18.13■□□□□ 0.49
CPSF1-211ENST00000533492 NUP133Q8WUM0 1156 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 RUFY2Q8WXA3 655 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 CYP39A1Q9NYL5 469 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 PNMA2Q9UL42 364 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 SYNRGQ9UMZ2 1314 aa18.13■□□□□ 0.49
CPSF1-211ENST00000533492 SOX1O00570 391 aaPredicted RBP18.12■□□□□ 0.49
CPSF1-211ENST00000533492 C6orf222P0C671 652 aaPredicted RBP18.12■□□□□ 0.49
CPSF1-211ENST00000533492 ACLYP53396 1101 aa18.12■□□□□ 0.49
CPSF1-211ENST00000533492 TLE2Q04725 743 aa18.12■□□□□ 0.49
CPSF1-211ENST00000533492 KCNA10Q16322 511 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms