RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 KRT23Q9C075 422 aa20.26■□□□□ 0.83
PHRF1-204ENST00000532550 GPCPD1Q9NPB8 672 aa20.26■□□□□ 0.83
PHRF1-204ENST00000532550 ZNF536O15090 1300 aa20.26■□□□□ 0.83
PHRF1-204ENST00000532550 RAD50Q92878 1312 aa20.26■□□□□ 0.83
PHRF1-204ENST00000532550 B4E1Z4 1266 aa20.25■□□□□ 0.83
PHRF1-204ENST00000532550 ALAS1P13196 640 aa20.25■□□□□ 0.83
PHRF1-204ENST00000532550 SLC16A2P36021 539 aa20.25■□□□□ 0.83
PHRF1-204ENST00000532550 BTNL9Q6UXG8 535 aa20.25■□□□□ 0.83
PHRF1-204ENST00000532550 CHRDL2Q6WN34 429 aa20.25■□□□□ 0.83
PHRF1-204ENST00000532550 C7orf61Q8IZ16 206 aa20.25■□□□□ 0.83
PHRF1-204ENST00000532550 SENP6Q9GZR1 1112 aaPredicted RBP20.25■□□□□ 0.83
PHRF1-204ENST00000532550 IL25Q9H293 177 aa20.25■□□□□ 0.83
PHRF1-204ENST00000532550 CNNM2Q9H8M5 875 aa20.25■□□□□ 0.83
PHRF1-204ENST00000532550 RNF146Q9NTX7 359 aa20.25■□□□□ 0.83
PHRF1-204ENST00000532550 PFASO15067 1338 aa20.25■□□□□ 0.83
PHRF1-204ENST00000532550 FRMPD2Q68DX3 1309 aaPredicted RBP20.25■□□□□ 0.83
PHRF1-204ENST00000532550 DNM1LO00429 736 aa20.24■□□□□ 0.83
PHRF1-204ENST00000532550 MYCNP04198 464 aaPredicted RBP20.24■□□□□ 0.83
PHRF1-204ENST00000532550 PDHBP11177 359 aa20.24■□□□□ 0.83
PHRF1-204ENST00000532550 GJC2Q5T442 439 aaPredicted RBP20.24■□□□□ 0.83
PHRF1-204ENST00000532550 SYDE2Q5VT97 1194 aa20.24■□□□□ 0.83
PHRF1-204ENST00000532550 MAMDC4Q6UXC1 1216 aa20.24■□□□□ 0.83
PHRF1-204ENST00000532550 ZNF467Q7Z7K2 595 aaPredicted RBP20.24■□□□□ 0.83
PHRF1-204ENST00000532550 ZSWIM5Q9P217 1185 aa20.24■□□□□ 0.83
PHRF1-204ENST00000532550 SYNGAP1Q96PV0 1343 aa20.24■□□□□ 0.83
PHRF1-204ENST00000532550 KBTBD13C9JR72 458 aa20.23■□□□□ 0.83
PHRF1-204ENST00000532550 POTEB2H3BUK9 544 aa20.23■□□□□ 0.83
PHRF1-204ENST00000532550 RARBP10826 455 aa20.23■□□□□ 0.83
PHRF1-204ENST00000532550 TAL1P17542 331 aaPredicted RBP20.23■□□□□ 0.83
PHRF1-204ENST00000532550 ZSCAN10Q96SZ4 725 aaPredicted RBP20.23■□□□□ 0.83
PHRF1-204ENST00000532550 KAT14Q9H8E8 782 aa20.23■□□□□ 0.83
PHRF1-204ENST00000532550 CCPG1Q9ULG6 757 aa20.23■□□□□ 0.83
PHRF1-204ENST00000532550 ALPK3Q96L96 1907 aa20.22■□□□□ 0.83
PHRF1-204ENST00000532550 SNAI1O95863 264 aaPredicted RBP20.22■□□□□ 0.83
PHRF1-204ENST00000532550 ICAM1P05362 532 aa20.22■□□□□ 0.83
PHRF1-204ENST00000532550 ZNF865P0CJ78 1059 aaPredicted RBP20.22■□□□□ 0.83
PHRF1-204ENST00000532550 ZNF543Q08ER8 600 aa20.22■□□□□ 0.83
PHRF1-204ENST00000532550 RANBP17Q9H2T7 1088 aaKnown RBP20.22■□□□□ 0.83
PHRF1-204ENST00000532550 FRMPD3Q5JV73 1810 aa20.22■□□□□ 0.83
PHRF1-204ENST00000532550 LAMA4Q16363 1823 aa20.21■□□□□ 0.83
PHRF1-204ENST00000532550 SNHG28P0DPA3 235 aa20.21■□□□□ 0.83
PHRF1-204ENST00000532550 AKR1A1P14550 325 aa20.21■□□□□ 0.83
PHRF1-204ENST00000532550 TRDNQ13061 729 aa20.21■□□□□ 0.83
PHRF1-204ENST00000532550 GPATCH4Q5T3I0 446 aaKnown RBP20.21■□□□□ 0.83
PHRF1-204ENST00000532550 PNMA1Q8ND90 353 aa20.21■□□□□ 0.83
PHRF1-204ENST00000532550 ANKS1AQ92625 1134 aa20.21■□□□□ 0.83
PHRF1-204ENST00000532550 UBAC1Q9BSL1 405 aa20.21■□□□□ 0.83
PHRF1-204ENST00000532550 A1CFQ9NQ94 594 aaKnown RBP20.21■□□□□ 0.83
PHRF1-204ENST00000532550 XPNPEP3Q9NQH7 507 aa20.21■□□□□ 0.83
PHRF1-204ENST00000532550 FAM184BQ9ULE4 1060 aa20.21■□□□□ 0.83
PHRF1-204ENST00000532550 U3KPZ7 1027 aaPredicted RBP20.21■□□□□ 0.83
PHRF1-204ENST00000532550 CNTN2Q02246 1040 aa20.2■□□□□ 0.82
PHRF1-204ENST00000532550 PTH1RQ03431 593 aa20.2■□□□□ 0.82
PHRF1-204ENST00000532550 ACVR2BQ13705 512 aa20.2■□□□□ 0.82
PHRF1-204ENST00000532550 LRRC41Q15345 812 aa20.2■□□□□ 0.82
PHRF1-204ENST00000532550 LRRC26Q2I0M4 334 aa20.2■□□□□ 0.82
PHRF1-204ENST00000532550 CENPQQ7L2Z9 268 aaPredicted RBP20.2■□□□□ 0.82
PHRF1-204ENST00000532550 ABHD16BQ9H3Z7 469 aa20.2■□□□□ 0.82
PHRF1-204ENST00000532550 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.2■□□□□ 0.82
PHRF1-204ENST00000532550 ZHX1Q9UKY1 873 aaPredicted RBP20.2■□□□□ 0.82
PHRF1-204ENST00000532550 PNMA2Q9UL42 364 aa20.2■□□□□ 0.82
PHRF1-204ENST00000532550 ZMYND8Q9ULU4 1186 aaPredicted RBP20.2■□□□□ 0.82
PHRF1-204ENST00000532550 TRIOBPQ9H2D6 2365 aa20.19■□□□□ 0.82
PHRF1-204ENST00000532550 SGSM2O43147 1006 aa20.19■□□□□ 0.82
PHRF1-204ENST00000532550 ATN1P54259 1190 aaPredicted RBP20.19■□□□□ 0.82
PHRF1-204ENST00000532550 MUM1L1Q5H9M0 696 aa20.19■□□□□ 0.82
PHRF1-204ENST00000532550 NSMFQ6X4W1 530 aa20.19■□□□□ 0.82
PHRF1-204ENST00000532550 RNF180Q86T96 592 aa20.19■□□□□ 0.82
PHRF1-204ENST00000532550 ENAHQ8N8S7 591 aaPredicted RBP20.19■□□□□ 0.82
PHRF1-204ENST00000532550 FAM133AQ8N9E0 248 aa20.19■□□□□ 0.82
PHRF1-204ENST00000532550 RBM27Q9P2N5 1060 aaKnown RBP20.19■□□□□ 0.82
PHRF1-204ENST00000532550 TNKSO95271 1327 aa20.19■□□□□ 0.82
PHRF1-204ENST00000532550 ASB14A6NK59 587 aa20.18■□□□□ 0.82
PHRF1-204ENST00000532550 SLC34A2O95436 690 aa20.18■□□□□ 0.82
PHRF1-204ENST00000532550 GOLGA8HP0CJ92 632 aa20.18■□□□□ 0.82
PHRF1-204ENST00000532550 KIAA1211Q6ZU35 1233 aa20.18■□□□□ 0.82
PHRF1-204ENST00000532550 ARMCX2Q7L311 632 aa20.18■□□□□ 0.82
PHRF1-204ENST00000532550 CCDC144CPQ8IYA2 1237 aa20.18■□□□□ 0.82
PHRF1-204ENST00000532550 FGD4Q96M96 766 aa20.18■□□□□ 0.82
PHRF1-204ENST00000532550 CYP39A1Q9NYL5 469 aa20.18■□□□□ 0.82
PHRF1-204ENST00000532550 PGK1P00558 417 aa20.17■□□□□ 0.82
PHRF1-204ENST00000532550 CYP21A2P08686 494 aa20.17■□□□□ 0.82
PHRF1-204ENST00000532550 SYN1P17600 705 aa20.17■□□□□ 0.82
PHRF1-204ENST00000532550 ADCYAP1R1P41586 468 aa20.17■□□□□ 0.82
PHRF1-204ENST00000532550 IFIT1BQ5T764 474 aaKnown RBP20.17■□□□□ 0.82
PHRF1-204ENST00000532550 UBA5Q9GZZ9 404 aa20.17■□□□□ 0.82
PHRF1-204ENST00000532550 MCM3APO60318 1980 aa20.17■□□□□ 0.82
PHRF1-204ENST00000532550 SOWAHBA6NEL2 793 aa20.16■□□□□ 0.82
PHRF1-204ENST00000532550 SLC39A5Q6ZMH5 540 aa20.16■□□□□ 0.82
PHRF1-204ENST00000532550 MAP4K1Q92918 833 aa20.16■□□□□ 0.82
PHRF1-204ENST00000532550 FERMT2Q96AC1 680 aa20.16■□□□□ 0.82
PHRF1-204ENST00000532550 DUSP11O75319 330 aaKnown RBP20.15■□□□□ 0.82
PHRF1-204ENST00000532550 PARP1P09874 1014 aaKnown RBP20.15■□□□□ 0.82
PHRF1-204ENST00000532550 BAATQ14032 418 aaPredicted RBP20.15■□□□□ 0.82
PHRF1-204ENST00000532550 CCDC144BQ3MJ40 725 aa20.15■□□□□ 0.82
PHRF1-204ENST00000532550 ASPRV1Q53RT3 343 aa20.15■□□□□ 0.82
PHRF1-204ENST00000532550 CYB5R4Q7L1T6 521 aa20.15■□□□□ 0.82
PHRF1-204ENST00000532550 RALYLQ86SE5 291 aaKnown RBP20.15■□□□□ 0.82
PHRF1-204ENST00000532550 ERICH2A1L162 156 aa20.14■□□□□ 0.81
PHRF1-204ENST00000532550 PTPDC1A2A3K4 754 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms