RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 FRMPD2Q68DX3 1309 aaPredicted RBP16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 SIPA1L1O43166 1804 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 A0A087WWV3 80 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 OR52Z1P0C646 297 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 TCP10Q12799 353 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 TRAF1Q13077 416 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 CCDC96Q2M329 555 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 RBM26Q5T8P6 1007 aaKnown RBP16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 SH3BP5LQ7L8J4 393 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 FAM151AQ8WW52 585 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 ZNF830Q96NB3 372 aaPredicted RBP16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 GMLQ99445 158 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 TDRD3Q9H7E2 651 aaKnown RBP16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 DNAJC18Q9H819 358 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 JMJD4Q9H9V9 463 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 GPCPD1Q9NPB8 672 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 ZNRF3Q9ULT6 936 aa16.73■□□□□ 0.27
ECHDC1-220ENST00000528402 FOXN1O15353 648 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 NRDCO43847 1150 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 EEF2P13639 858 aaKnown RBP16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 DPEP1P16444 411 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 KCNA3P22001 575 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 PTGS1P23219 599 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 UBA7P41226 1012 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 SLC1A4P43007 532 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 FANCCQ00597 558 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 DLGAP5Q15398 846 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 IL17AQ16552 155 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 SLFN13Q68D06 897 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 ISM2Q6H9L7 571 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 RASGRP4Q8TDF6 673 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 GMCL1Q96IK5 515 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 PRMT6Q96LA8 375 aaPredicted RBP16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 PIM2Q9P1W9 311 aa16.72■□□□□ 0.27
ECHDC1-220ENST00000528402 A0A087X0B3 334 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 SPDYE2BA6NHP3 402 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 CCNT1O60563 726 aaKnown RBP16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 PRR29P0C7W0 189 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 SPDYE6P0CI01 402 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 HOXA7P31268 230 aaPredicted RBP16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 EIF6P56537 245 aaKnown RBP16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 ATP2B2Q01814 1243 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 ICA1Q05084 483 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 RRAGBQ5VZM2 374 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 PDXDC2PQ6P474 469 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 NIM1KQ8IY84 436 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 CUL5Q93034 780 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 RAB34Q9BZG1 259 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 KCNF1Q9H3M0 494 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 DISC1Q9NRI5 854 aa16.71■□□□□ 0.27
ECHDC1-220ENST00000528402 ADAMTS3O15072 1205 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 TBC1D12O60347 775 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 GCFC2P16383 781 aaKnown RBP16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 BMP6P22004 513 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 STAT6P42226 847 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 AFMP43652 599 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 UBASH3AP57075 661 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 LETM2Q2VYF4 491 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 PPP4R3AQ6IN85 833 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 LRRC8AQ8IWT6 810 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 CCDC150Q8NCX0 1101 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 TBCKQ8TEA7 893 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 CPVLQ9H3G5 476 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 IFNKQ9P0W0 207 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 PSMD14O00487 310 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 SERPINC1P01008 464 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 POLD1P28340 1107 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 LMOD1P29536 600 aaPredicted RBP16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 CLK2P49760 499 aaKnown RBP16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 CACNB3P54284 484 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 PDIA5Q14554 519 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 DEFB132Q7Z7B7 95 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 FAM83AQ86UY5 434 aa16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 XPO4Q9C0E2 1151 aaKnown RBP16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 BIN2Q9UBW5 565 aaPredicted RBP16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 ZNF70Q9UC06 446 aaPredicted RBP16.7■□□□□ 0.26
ECHDC1-220ENST00000528402 SLC26A4O43511 780 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 PPP1R2P41236 205 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 AMPD3Q01432 767 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 KCNB1Q14721 858 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 SEPT2Q15019 361 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 TMEM266Q2M3C6 531 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 SPATA1Q5VX52 437 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 JAKMIP3Q5VZ66 844 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 CCDC47Q96A33 483 aaKnown RBP16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 COA7Q96BR5 231 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 CSRNP1Q96S65 589 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 HSD3B7Q9H2F3 369 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 TMEM60Q9H2L4 133 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 PSTPIP2Q9H939 334 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 ARHGEF10LQ9HCE6 1279 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 FANCLQ9NW38 375 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 NRBP1Q9UHY1 535 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 PCDHAC2Q9Y5I4 1007 aa16.69■□□□□ 0.26
ECHDC1-220ENST00000528402 F5H6K3 240 aa16.68■□□□□ 0.26
ECHDC1-220ENST00000528402 CDK11BP21127 795 aaKnown RBP16.68■□□□□ 0.26
ECHDC1-220ENST00000528402 FXR2P51116 673 aaKnown RBP eCLIP16.68■□□□□ 0.26
ECHDC1-220ENST00000528402 KLRC3Q07444 240 aa16.68■□□□□ 0.26
ECHDC1-220ENST00000528402 TNIP1Q15025 636 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms