RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 PRO3102Q9H379 93 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 CWC22Q9HCG8 908 aaKnown RBP12.57□□□□□ -0.4
CD44-227ENST00000528086 GPCPD1Q9NPB8 672 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 DDX20Q9UHI6 824 aaKnown RBP12.57□□□□□ -0.4
CD44-227ENST00000528086 DIS3Q9Y2L1 958 aaKnown RBP12.57□□□□□ -0.4
CD44-227ENST00000528086 BAZ2BQ9UIF8 2168 aaKnown RBP12.57□□□□□ -0.4
CD44-227ENST00000528086 SZT2Q5T011 3432 aa12.56□□□□□ -0.4
CD44-227ENST00000528086 SOWAHBA6NEL2 793 aa12.56□□□□□ -0.4
CD44-227ENST00000528086 ANTXR2P58335 489 aa12.56□□□□□ -0.4
CD44-227ENST00000528086 IRX5P78411 483 aaPredicted RBP12.56□□□□□ -0.4
CD44-227ENST00000528086 MAMDC4Q6UXC1 1216 aa12.56□□□□□ -0.4
CD44-227ENST00000528086 FAM133AQ8N9E0 248 aa12.56□□□□□ -0.4
CD44-227ENST00000528086 CHURC1Q8WUH1 139 aa12.56□□□□□ -0.4
CD44-227ENST00000528086 MAP4K1Q92918 833 aa12.56□□□□□ -0.4
CD44-227ENST00000528086 LENG1Q96BZ8 264 aaPredicted RBP12.56□□□□□ -0.4
CD44-227ENST00000528086 TINF2Q9BSI4 451 aa12.56□□□□□ -0.4
CD44-227ENST00000528086 LSG1Q9H089 658 aaKnown RBP12.56□□□□□ -0.4
CD44-227ENST00000528086 A1CFQ9NQ94 594 aaKnown RBP12.56□□□□□ -0.4
CD44-227ENST00000528086 LAMA3Q16787 3333 aa12.56□□□□□ -0.4
CD44-227ENST00000528086 MYH6P13533 1939 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 SEPT4O43236 478 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 GOLGA8HP0CJ92 632 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 PTGS1P23219 599 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 SLC4A3P48751 1232 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 KCTD2Q14681 263 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 SYDE2Q5VT97 1194 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 CCDC174Q6PII3 467 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 CENPQQ7L2Z9 268 aaPredicted RBP12.55□□□□□ -0.4
CD44-227ENST00000528086 NECAB2Q7Z6G3 386 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 DGKHQ86XP1 1220 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 CLEC4DQ8WXI8 215 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 ESR2Q92731 530 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 ZSCAN10Q96SZ4 725 aaPredicted RBP12.55□□□□□ -0.4
CD44-227ENST00000528086 RNF41Q9H4P4 317 aaPredicted RBP12.55□□□□□ -0.4
CD44-227ENST00000528086 HOMER2Q9NSB8 354 aa12.55□□□□□ -0.4
CD44-227ENST00000528086 COPB2P35606 906 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 IMMTQ16891 758 aaKnown RBP12.54□□□□□ -0.4
CD44-227ENST00000528086 LRRC26Q2I0M4 334 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 CCDC96Q2M329 555 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 PPP4R3BQ5MIZ7 849 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 TMEM63BQ5T3F8 832 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 STAG2Q8N3U4 1231 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 CHST13Q8NET6 341 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 TRERF1Q96PN7 1200 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 ESYT1Q9BSJ8 1104 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 UBA5Q9GZZ9 404 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 GPHNQ9NQX3 736 aaPredicted RBP12.54□□□□□ -0.4
CD44-227ENST00000528086 RNF146Q9NTX7 359 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 COLQQ9Y215 455 aaPredicted RBP12.54□□□□□ -0.4
CD44-227ENST00000528086 TNKSO95271 1327 aa12.54□□□□□ -0.4
CD44-227ENST00000528086 E7EWF7 191 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 NFIBO00712 420 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 ICAM1P05362 532 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 FDX1P10109 184 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 ALAS1P13196 640 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 CAPN2P17655 700 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 CNGA1P29973 690 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 GJC2Q5T442 439 aaPredicted RBP12.53□□□□□ -0.4
CD44-227ENST00000528086 ZNF467Q7Z7K2 595 aaPredicted RBP12.53□□□□□ -0.4
CD44-227ENST00000528086 MB21D2Q8IYB1 491 aaPredicted RBP12.53□□□□□ -0.4
CD44-227ENST00000528086 PNMA1Q8ND90 353 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 DPF3Q92784 378 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 C11orf49Q9H6J7 331 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 CYP39A1Q9NYL5 469 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 CTNNA3Q9UI47 895 aa12.53□□□□□ -0.4
CD44-227ENST00000528086 RBM8AQ9Y5S9 174 aaKnown RBP12.53□□□□□ -0.4
CD44-227ENST00000528086 MYADML2A6NDP7 307 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 CTAGE5O15320 804 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 ADAMTS4O75173 837 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 NECTIN1Q15223 517 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 LRRC41Q15345 812 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 BMP2KLQ5H9B9 411 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 CHST3Q7LGC8 479 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 CCDC144CPQ8IYA2 1237 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 TBC1D5Q92609 795 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 DDX11Q96FC9 970 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 ACAD9Q9H845 621 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.52□□□□□ -0.41
CD44-227ENST00000528086 NRBP1Q9UHY1 535 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 ISY1Q9ULR0 285 aaKnown RBP12.52□□□□□ -0.41
CD44-227ENST00000528086 SYNGAP1Q96PV0 1343 aa12.52□□□□□ -0.41
CD44-227ENST00000528086 LAMA2P24043 3122 aaKnown RBP12.51□□□□□ -0.41
CD44-227ENST00000528086 PPP1R11O60927 126 aaPredicted RBP12.51□□□□□ -0.41
CD44-227ENST00000528086 PGK1P00558 417 aa12.51□□□□□ -0.41
CD44-227ENST00000528086 IKQ13123 557 aaPredicted RBP12.51□□□□□ -0.41
CD44-227ENST00000528086 TKFCQ3LXA3 575 aa12.51□□□□□ -0.41
CD44-227ENST00000528086 HABP4Q5JVS0 413 aaKnown RBP12.51□□□□□ -0.41
CD44-227ENST00000528086 CCSAPQ6IQ19 270 aaPredicted RBP12.51□□□□□ -0.41
CD44-227ENST00000528086 ARMCX2Q7L311 632 aa12.51□□□□□ -0.41
CD44-227ENST00000528086 ANKRD35Q8N283 1001 aa12.51□□□□□ -0.41
CD44-227ENST00000528086 IGDCC4Q8TDY8 1250 aa12.51□□□□□ -0.41
CD44-227ENST00000528086 RUFY2Q8WXA3 655 aa12.51□□□□□ -0.41
CD44-227ENST00000528086 HTATIP2Q9BUP3 242 aa12.51□□□□□ -0.41
CD44-227ENST00000528086 KRT23Q9C075 422 aa12.51□□□□□ -0.41
CD44-227ENST00000528086 SLC5A4Q9NY91 659 aa12.51□□□□□ -0.41
CD44-227ENST00000528086 CCPG1Q9ULG6 757 aa12.51□□□□□ -0.41
CD44-227ENST00000528086 U3KPZ7 1027 aaPredicted RBP12.51□□□□□ -0.41
CD44-227ENST00000528086 LTBP2Q14767 1821 aa12.51□□□□□ -0.41
CD44-227ENST00000528086 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.5□□□□□ -0.41
CD44-227ENST00000528086 PALM3A6NDB9 673 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms