RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TIMP1P01033 207 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 ASGR1P07306 291 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 MS4A1P11836 297 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 DNAJB2P25686 324 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 COPB2P35606 906 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 FPGSQ05932 587 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 TMEM240Q5SV17 173 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 ARMCX2Q7L311 632 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 FAM126BQ8IXS8 530 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 FAM133AQ8N9E0 248 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 DCTPP1Q9H773 170 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 INCENPQ9NQS7 918 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 FAM184BQ9ULE4 1060 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 CNPY2Q9Y2B0 182 aa17.08■□□□□ 0.32
CPSF1-201ENST00000526271 UMODL1Q5DID0 1318 aa17.07■□□□□ 0.32
CPSF1-201ENST00000526271 MOXD2PA6NHM9 499 aa17.07■□□□□ 0.32
CPSF1-201ENST00000526271 FOSL2P15408 326 aa17.07■□□□□ 0.32
CPSF1-201ENST00000526271 SLC4A3P48751 1232 aa17.07■□□□□ 0.32
CPSF1-201ENST00000526271 GJA9P57773 515 aa17.07■□□□□ 0.32
CPSF1-201ENST00000526271 NKX3-2P78367 333 aa17.07■□□□□ 0.32
CPSF1-201ENST00000526271 AMOTL1Q8IY63 956 aa17.07■□□□□ 0.32
CPSF1-201ENST00000526271 KIFC2Q96AC6 838 aa17.07■□□□□ 0.32
CPSF1-201ENST00000526271 CHMP4CQ96CF2 233 aa17.07■□□□□ 0.32
CPSF1-201ENST00000526271 RCAN3Q9UKA8 241 aa17.07■□□□□ 0.32
CPSF1-201ENST00000526271 TRANK1O15050 2925 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 RBAK-RBAKDNI3L0D1 243 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 CD4P01730 458 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 ACRP10323 421 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 CSF2RAP15509 400 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 BEX3Q00994 111 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 ZSCAN25Q6NSZ9 544 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 CCDC144CPQ8IYA2 1237 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 IFNL3Q8IZI9 196 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 GMCL1P1Q8NEA9 526 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 PI4K2BQ8TCG2 481 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 DDX11Q96FC9 970 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 AGBL1Q96MI9 1066 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 PURBQ96QR8 312 aaKnown RBP17.06■□□□□ 0.32
CPSF1-201ENST00000526271 PBX4Q9BYU1 374 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 MKNK2Q9HBH9 465 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 GNEQ9Y223 722 aaKnown RBP17.06■□□□□ 0.32
CPSF1-201ENST00000526271 BDP1A6H8Y1 2624 aa17.06■□□□□ 0.32
CPSF1-201ENST00000526271 XIRP2A4UGR9 3374 aa17.05■□□□□ 0.32
CPSF1-201ENST00000526271 ELP1O95163 1332 aa17.05■□□□□ 0.32
CPSF1-201ENST00000526271 TMEM265A0A087WTH1 108 aa17.05■□□□□ 0.32
CPSF1-201ENST00000526271 C6orf222P0C671 652 aaPredicted RBP17.05■□□□□ 0.32
CPSF1-201ENST00000526271 SNAP25P60880 206 aa17.05■□□□□ 0.32
CPSF1-201ENST00000526271 MFSD5Q6N075 450 aa17.05■□□□□ 0.32
CPSF1-201ENST00000526271 SLC43A3Q8NBI5 491 aa17.05■□□□□ 0.32
CPSF1-201ENST00000526271 NEDD1Q8NHV4 660 aa17.05■□□□□ 0.32
CPSF1-201ENST00000526271 DDRGK1Q96HY6 314 aa17.05■□□□□ 0.32
CPSF1-201ENST00000526271 A1CFQ9NQ94 594 aaKnown RBP17.05■□□□□ 0.32
CPSF1-201ENST00000526271 IL17RBQ9NRM6 502 aa17.05■□□□□ 0.32
CPSF1-201ENST00000526271 CXXC1Q9P0U4 656 aaPredicted RBP17.05■□□□□ 0.32
CPSF1-201ENST00000526271 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.05■□□□□ 0.32
CPSF1-201ENST00000526271 SCN5AQ14524 2016 aa17.04■□□□□ 0.32
CPSF1-201ENST00000526271 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-201ENST00000526271 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-201ENST00000526271 DCDC2CA8MYV0 355 aa17.04■□□□□ 0.32
CPSF1-201ENST00000526271 ARVCFO00192 962 aa17.04■□□□□ 0.32
CPSF1-201ENST00000526271 ADGRE1Q14246 886 aa17.04■□□□□ 0.32
CPSF1-201ENST00000526271 MUM1L1Q5H9M0 696 aa17.04■□□□□ 0.32
CPSF1-201ENST00000526271 SLFN13Q68D06 897 aa17.04■□□□□ 0.32
CPSF1-201ENST00000526271 ABHD16BQ9H3Z7 469 aa17.04■□□□□ 0.32
CPSF1-201ENST00000526271 ZNF576Q9H609 170 aa17.04■□□□□ 0.32
CPSF1-201ENST00000526271 PDGFCQ9NRA1 345 aa17.04■□□□□ 0.32
CPSF1-201ENST00000526271 HOMER2Q9NSB8 354 aa17.04■□□□□ 0.32
CPSF1-201ENST00000526271 FEM1BQ9UK73 627 aa17.04■□□□□ 0.32
CPSF1-201ENST00000526271 SALL3Q9BXA9 1300 aa17.03■□□□□ 0.32
CPSF1-201ENST00000526271 PATL2C9JE40 543 aaKnown RBP17.03■□□□□ 0.32
CPSF1-201ENST00000526271 NMT2O60551 498 aa17.03■□□□□ 0.32
CPSF1-201ENST00000526271 ZBED4O75132 1171 aa17.03■□□□□ 0.32
CPSF1-201ENST00000526271 CYP2C18P33260 490 aa17.03■□□□□ 0.32
CPSF1-201ENST00000526271 OAZ1P54368 228 aa17.03■□□□□ 0.32
CPSF1-201ENST00000526271 CCDC129Q6ZRS4 1044 aa17.03■□□□□ 0.32
CPSF1-201ENST00000526271 ZNF365Q70YC5 407 aa17.03■□□□□ 0.32
CPSF1-201ENST00000526271 CHST13Q8NET6 341 aa17.03■□□□□ 0.32
CPSF1-201ENST00000526271 NUP133Q8WUM0 1156 aa17.03■□□□□ 0.32
CPSF1-201ENST00000526271 PPP1R12CQ9BZL4 782 aa17.03■□□□□ 0.32
CPSF1-201ENST00000526271 PCDHB15Q9Y5E8 787 aa17.03■□□□□ 0.32
CPSF1-201ENST00000526271 TMEM232C9JQI7 657 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 TTLL1O95922 423 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 BMP3P12645 472 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 SMPD1P17405 629 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 TDO2P48775 406 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 ZMYM1Q5SVZ6 1142 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 TAPT1Q6NXT6 567 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 CXCL17Q6UXB2 119 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 ANKRD35Q8N283 1001 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 TIFAQ96CG3 184 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 GLT1D1Q96MS3 346 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 SYNPO2Q9UMS6 1093 aa17.02■□□□□ 0.32
CPSF1-201ENST00000526271 A0A0U1RQG5 324 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-201ENST00000526271 NOVP48745 357 aa17.01■□□□□ 0.31
CPSF1-201ENST00000526271 TFAP4Q01664 338 aa17.01■□□□□ 0.31
CPSF1-201ENST00000526271 PPARAQ07869 468 aa17.01■□□□□ 0.31
CPSF1-201ENST00000526271 GNASQ5JWF2 1037 aa17.01■□□□□ 0.31
CPSF1-201ENST00000526271 ZNF444Q8N0Y2 327 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-201ENST00000526271 WNT8AQ9H1J5 351 aa17.01■□□□□ 0.31
CPSF1-201ENST00000526271 RNF146Q9NTX7 359 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms