RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 LRRC59Q96AG4 307 aaKnown RBP8.08□□□□□ -1.12
NIPBL-208ENST00000514335 NUDT16Q96DE0 195 aaKnown RBP8.08□□□□□ -1.12
NIPBL-208ENST00000514335 MTMR12Q9C0I1 747 aa8.08□□□□□ -1.12
NIPBL-208ENST00000514335 CLSTN2Q9H4D0 955 aa8.08□□□□□ -1.12
NIPBL-208ENST00000514335 RABEP2Q9H5N1 569 aa8.08□□□□□ -1.12
NIPBL-208ENST00000514335 LUZP4Q9P127 313 aa8.08□□□□□ -1.12
NIPBL-208ENST00000514335 RNF8O76064 485 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 LDHBP07195 334 aaKnown RBP8.07□□□□□ -1.12
NIPBL-208ENST00000514335 ST5P78524 1137 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 PPFIBP1Q86W92 1011 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 ARHGEF2Q92974 986 aaKnown RBP8.07□□□□□ -1.12
NIPBL-208ENST00000514335 FAM126AQ9BYI3 521 aaPredicted RBP8.07□□□□□ -1.12
NIPBL-208ENST00000514335 PDRG1Q9NUG6 133 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 CUEDC1Q9NWM3 386 aaPredicted RBP8.07□□□□□ -1.12
NIPBL-208ENST00000514335 PCDHGB3Q9Y5G1 929 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 TMEM88BA6NKF7 163 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 SNX2O60749 519 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 CLASP2O75122 1294 aaKnown RBP8.07□□□□□ -1.12
NIPBL-208ENST00000514335 MYL3P08590 195 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 PNMA6AP0CW24 399 aaPredicted RBP8.07□□□□□ -1.12
NIPBL-208ENST00000514335 MTHFD1P11586 935 aaKnown RBP8.07□□□□□ -1.12
NIPBL-208ENST00000514335 TNFAIP3P21580 790 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 TUBA1BP68363 451 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 SYCP1Q15431 976 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 TEX35Q5T0J7 233 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 CFAP161Q6P656 301 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 CCDC129Q6ZRS4 1044 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 TUBA1AQ71U36 451 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 BTN2A1Q7KYR7 527 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 RAB11FIP4Q86YS3 637 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 IQUBQ8NA54 791 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 UQCC2Q9BRT2 126 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 TINF2Q9BSI4 451 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 ZCWPW1Q9H0M4 648 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 CEP72Q9P209 647 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 TTLL3Q9Y4R7 772 aa8.07□□□□□ -1.12
NIPBL-208ENST00000514335 CPLX1O14810 134 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 EPB42P16452 691 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 PLA2G4AP47712 749 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 CLNS1AP54105 237 aaKnown RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 SUZ12Q15022 739 aaKnown RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 ZRSR1Q15695 479 aaKnown RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 CWF19L1Q69YN2 538 aaKnown RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 CAPN12Q6ZSI9 719 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 TADA2BQ86TJ2 420 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 LURAP1LQ8IV03 231 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 KIRREL3Q8IZU9 778 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 OR8K1Q8NGG5 319 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 ACMSDQ8TDX5 336 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 TSGA13Q96PP4 275 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 SRPK1Q96SB4 655 aaKnown RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 NAP1L3Q99457 506 aaPredicted RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 TYW1Q9NV66 732 aaKnown RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 SIRT5Q9NXA8 310 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 C9orf78Q9NZ63 289 aaPredicted RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 SLC4A4Q9Y6R1 1079 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 PTPRUQ92729 1446 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 A0A1B0GVG6 124 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 TSPY2A6NKD2 308 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 KIF3BO15066 747 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 KPNA6O60684 536 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 TSPY3P0CV98 308 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 TSPY8P0CW00 308 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 CES1P23141 567 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 CDK17Q00537 523 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 TSPY1Q01534 308 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 PDE3BQ13370 1112 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 INAQ16352 499 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 CREB3L3Q68CJ9 461 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 POTEEQ6S8J3 1075 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 BEND5Q7L4P6 421 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 TMEM87AQ8NBN3 555 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 FERD3LQ96RJ6 166 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 TTPALQ9BTX7 342 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 TUBA8Q9NY65 449 aaPredicted RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 BZW2Q9Y6E2 419 aaKnown RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 KDRP35968 1356 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 PARP1P09874 1014 aaKnown RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 YY1P25490 414 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 HNRNPMP52272 730 aaKnown RBP eCLIP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 CD83Q01151 205 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 FKBP5Q13451 457 aaPredicted RBP8.06□□□□□ -1.12
NIPBL-208ENST00000514335 ANKRD39Q53RE8 183 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 PTF1AQ7RTS3 328 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 FCHSD1Q86WN1 690 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 MFN1Q8IWA4 741 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 CEP131Q9UPN4 1083 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 PCDHGC5Q9Y5F6 944 aa8.06□□□□□ -1.12
NIPBL-208ENST00000514335 KRBA1A5PL33 1030 aa8.05□□□□□ -1.12
NIPBL-208ENST00000514335 ANKRD65E5RJM6 399 aa8.05□□□□□ -1.12
NIPBL-208ENST00000514335 ACSL4O60488 711 aa8.05□□□□□ -1.12
NIPBL-208ENST00000514335 AGR2O95994 175 aa8.05□□□□□ -1.12
NIPBL-208ENST00000514335 DESP17661 470 aa8.05□□□□□ -1.12
NIPBL-208ENST00000514335 CD9P21926 228 aa8.05□□□□□ -1.12
NIPBL-208ENST00000514335 HOXD12P35452 270 aa8.05□□□□□ -1.12
NIPBL-208ENST00000514335 NR2C2P49116 596 aa8.05□□□□□ -1.12
NIPBL-208ENST00000514335 RRP1P56182 461 aaKnown RBP8.05□□□□□ -1.12
NIPBL-208ENST00000514335 MLLT1Q03111 559 aaPredicted RBP8.05□□□□□ -1.12
NIPBL-208ENST00000514335 SMAD4Q13485 552 aaKnown RBP8.05□□□□□ -1.12
NIPBL-208ENST00000514335 CENPQQ7L2Z9 268 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms