RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 SERPINB8P50452 374 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 IL9RQ01113 521 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 KRT76Q01546 638 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 MED21Q13503 144 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 RAB3GAP1Q15042 981 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 KCTD21Q4G0X4 260 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 TDRD12Q587J7 1177 aaKnown RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 LRRC8EQ6NSJ5 796 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 IKBIPQ70UQ0 350 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 CENPUQ71F23 418 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 CDR2LQ86X02 465 aaPredicted RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 MICALL2Q8IY33 904 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 RGS22Q8NE09 1264 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 RNASE11Q8TAA1 199 aaKnown RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 PSMA8Q8TAA3 256 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 KRT23Q9C075 422 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 CARD9Q9H257 536 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 TRIM45Q9H8W5 580 aaPredicted RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 TLK1Q9UKI8 766 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 COG6Q9Y2V7 657 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.92□□□□□ -1.78
USP53-205ENST00000509769 PLEKHG2Q9H7P9 1386 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 NUTM2FA1L443 756 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 RSPH10B2B2RC85 870 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 APOL1O14791 398 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 ZC3H11AO75152 810 aaKnown RBP eCLIP3.92□□□□□ -1.78
USP53-205ENST00000509769 S100BP04271 92 aaPredicted RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 RSPH10BP0C881 870 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 TCP1P17987 556 aaKnown RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 CCND1P24385 295 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 MAP3K12Q12852 859 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 LAMB3Q13751 1172 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 KBTBD12Q3ZCT8 623 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 CCDC153Q494R4 210 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 TMEM259Q4ZIN3 620 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 NUTM2GQ5VZR2 741 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 ARHGAP22Q7Z5H3 698 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 NECAB1Q8N987 351 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 CNNM3Q8NE01 707 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 TRPC4APQ8TEL6 797 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 MTERF3Q96E29 417 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 CHAMP1Q96JM3 812 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 TBC1D32Q96NH3 1257 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 POLR3CQ9BUI4 534 aaPredicted RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 BRIP1Q9BX63 1249 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 BCL2L12Q9HB09 334 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 DSEQ9UL01 958 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 STRCP1A6NGW2 1772 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 PRPF6O94906 941 aaKnown RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 NOP2P46087 812 aaKnown RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 ITIH3Q06033 890 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 NCAPH2Q6IBW4 605 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 ARHGEF18Q6ZSZ5 1173 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 BZW1Q7L1Q6 419 aaKnown RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 OTUD6AQ7L8S5 288 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 NUDCD3Q8IVD9 361 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 ATP8B4Q8TF62 1192 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 ITFG2Q969R8 447 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 LRGUKQ96M69 825 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 JPH2Q9BR39 696 aaPredicted RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 TRAIPQ9BWF2 469 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 CDCA7Q9BWT1 371 aaPredicted RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 RMI1Q9H9A7 625 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 RGL1Q9NZL6 768 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 BLOC1S6Q9UL45 172 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 WDR37Q9Y2I8 494 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 ADGRL3Q9HAR2 1447 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 ATP10DQ9P241 1426 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 CHD4Q14839 1912 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 AKR1B15C9JRZ8 316 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 IDH3BO43837 385 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 ONECUT3O60422 494 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 SPAG7O75391 227 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 TRIM27P14373 513 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 MTIF2P46199 727 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 KPNA2P52292 529 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 EPHB4P54760 987 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 PLCB3Q01970 1234 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 DMPKQ09013 629 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 UAP1Q16222 522 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 BMP2KLQ5H9B9 411 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CHD1LQ86WJ1 897 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 NCAPG2Q86XI2 1143 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CCDC82Q8N4S0 544 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 TMIEQ8NEW7 156 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CLMNQ96JQ2 1002 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 TMEM60Q9H2L4 133 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 EPS8L2Q9H6S3 715 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 KCNK9Q9NPC2 374 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 ATAD3AQ9NVI7 634 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CIDEBQ9UHD4 219 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 LCMT1Q9UIC8 334 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 BAG5Q9UL15 447 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CAPN11Q9UMQ6 739 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 SNX5Q9Y5X3 404 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 SLC4A7Q9Y6M7 1214 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 H0Y626 953 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 PSMA7O14818 248 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 BRD1O95696 1058 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CAPN1P07384 714 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms