RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 MAGEC2Q9UBF1 373 aaPredicted RBP5.59□□□□□ -1.51
USP53-204ENST00000507906 SFMBT1Q9UHJ3 866 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 U3KQE9 123 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 TCRBV16S1A1N1A0A5B0 115 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 WASH4PA8MWX3 477 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 GAS2O43903 313 aaKnown RBP5.58□□□□□ -1.52
USP53-204ENST00000507906 PRAMEF1O95521 474 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 S100BP04271 92 aaPredicted RBP5.58□□□□□ -1.52
USP53-204ENST00000507906 SCG5P05408 212 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 SNRPB2P08579 225 aaKnown RBP5.58□□□□□ -1.52
USP53-204ENST00000507906 ADMP35318 185 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 SOX5P35711 763 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 ETV3P41162 512 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 ECI1P42126 302 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 KCNJ6P48051 423 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 MBTPS1Q14703 1052 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 SKOR2Q2VWA4 1001 aaPredicted RBP5.58□□□□□ -1.52
USP53-204ENST00000507906 FAM20CQ8IXL6 584 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 DTWD2Q8NBA8 298 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 JDP2Q8WYK2 163 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 MYRFLQ96LU7 910 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 GPRC5CQ9NQ84 441 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 SLC52A1Q9NWF4 448 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 TMEFF2Q9UIK5 374 aaPredicted RBP5.58□□□□□ -1.52
USP53-204ENST00000507906 PCDHA9Q9Y5H5 950 aa5.58□□□□□ -1.52
USP53-204ENST00000507906 KATNA1O75449 491 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 CBX7O95931 251 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 POU3F2P20265 443 aaPredicted RBP5.57□□□□□ -1.52
USP53-204ENST00000507906 HOXC12P31275 282 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 GABREP78334 506 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 MAP4K2Q12851 820 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 DOC2BQ14184 412 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 ADGRE1Q14246 886 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 CT47A1Q5JQC4 288 aaPredicted RBP5.57□□□□□ -1.52
USP53-204ENST00000507906 ODR4Q5SWX8 454 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 USP53Q70EK8 1073 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 Q8N3U1 123 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 FRS2Q8WU20 508 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 PTPRN2Q92932 1015 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 CHMP4AQ9BY43 222 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 CEP41Q9BYV8 373 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 CYP26B1Q9NR63 512 aa5.57□□□□□ -1.52
USP53-204ENST00000507906 TPX2Q9ULW0 747 aaKnown RBP5.57□□□□□ -1.52
USP53-204ENST00000507906 FAM95CA0A1B0GW59 222 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 SIGLEC6O43699 453 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 MSCO60682 206 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 KPNA6O60684 536 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 CRTAMO95727 393 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 FAM87AP0C7U9 286 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 SPATA31C1P0DKV0 1188 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 RXRBP28702 533 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 ID4P47928 161 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 EXOSC10Q01780 885 aaKnown RBP5.56□□□□□ -1.52
USP53-204ENST00000507906 NRG1Q02297 640 aaPredicted RBP5.56□□□□□ -1.52
USP53-204ENST00000507906 SCRN1Q12765 414 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 STRN3Q13033 797 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 GRB10Q13322 594 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 MAP7Q14244 749 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 NFKBIBQ15653 356 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 POMZP3Q6PJE2 187 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 CRTC3Q6UUV7 619 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 DDX46Q7L014 1031 aaKnown RBP5.56□□□□□ -1.52
USP53-204ENST00000507906 FMNL3Q8IVF7 1028 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 CCDC103Q8IW40 242 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 ATL2Q8NHH9 583 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 NPLOC4Q8TAT6 608 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 KCTD13Q8WZ19 329 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 COPS5Q92905 334 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 UTP4Q969X6 686 aaKnown RBP5.56□□□□□ -1.52
USP53-204ENST00000507906 TRIM8Q9BZR9 551 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 CCDC8Q9H0W5 538 aaPredicted RBP5.56□□□□□ -1.52
USP53-204ENST00000507906 CHST7Q9NS84 486 aa5.56□□□□□ -1.52
USP53-204ENST00000507906 PHLDB1Q86UU1 1377 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 STXBP3O00186 592 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 ASLP04424 464 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 THBDP07204 575 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 JMJD7P0C870 316 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 IFNGR1P15260 489 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 NEK4P51957 841 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 AMPD2Q01433 879 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 TNK2Q07912 1038 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 NMIQ13287 307 aaPredicted RBP5.55□□□□□ -1.52
USP53-204ENST00000507906 TSR2Q969E8 191 aaKnown RBP5.55□□□□□ -1.52
USP53-204ENST00000507906 CCDC140Q96MF4 163 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 FCRL3Q96P31 734 aaPredicted RBP5.55□□□□□ -1.52
USP53-204ENST00000507906 SSBP4Q9BWG4 385 aaPredicted RBP5.55□□□□□ -1.52
USP53-204ENST00000507906 NOP53Q9NZM5 478 aaKnown RBP5.55□□□□□ -1.52
USP53-204ENST00000507906 FAN1Q9Y2M0 1017 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 PCDHA8Q9Y5H6 950 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 EID1Q9Y6B2 187 aa5.55□□□□□ -1.52
USP53-204ENST00000507906 C9orf172C9J069 976 aa5.54□□□□□ -1.52
USP53-204ENST00000507906 NEMP1O14524 444 aa5.54□□□□□ -1.52
USP53-204ENST00000507906 AURKAO14965 403 aa5.54□□□□□ -1.52
USP53-204ENST00000507906 OPA1O60313 960 aa5.54□□□□□ -1.52
USP53-204ENST00000507906 LCP1P13796 627 aa5.54□□□□□ -1.52
USP53-204ENST00000507906 ITGB7P26010 798 aa5.54□□□□□ -1.52
USP53-204ENST00000507906 GUCY2FP51841 1108 aa5.54□□□□□ -1.52
USP53-204ENST00000507906 STAT4Q14765 748 aa5.54□□□□□ -1.52
USP53-204ENST00000507906 LRRC41Q15345 812 aa5.54□□□□□ -1.52
USP53-204ENST00000507906 SFRP5Q5T4F7 317 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms