RNA–Protein interactions for RNA: ENST00000498725.5

CCDC171-209, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-209ENST00000498725 ZBBXA8MT70 800 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 RFXAPO00287 272 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 CHGBP05060 677 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 KCNQ1P51787 676 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 PPP2R2DQ66LE6 453 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 FAM126BQ8IXS8 530 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 REPS2Q8NFH8 660 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 CHMP4CQ96CF2 233 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 CCDC17Q96LX7 622 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 SLF1Q9BQI6 1058 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 CERS4Q9HA82 394 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 RAVER2Q9HCJ3 691 aaKnown RBP10.98□□□□□ -0.65
CCDC171-209ENST00000498725 ELP1O95163 1332 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 SYNGAP1Q96PV0 1343 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 LRRC37A2A6NM11 1700 aa10.98□□□□□ -0.65
CCDC171-209ENST00000498725 GREB1LQ9C091 1923 aaPredicted RBP10.97□□□□□ -0.65
CCDC171-209ENST00000498725 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.97□□□□□ -0.65
CCDC171-209ENST00000498725 PTGS1P23219 599 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 COPB2P35606 906 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 C12orf60Q5U649 245 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 CXCL17Q6UXB2 119 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 C16orf86Q6ZW13 317 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 ERC1Q8IUD2 1116 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 ANKRD35Q8N283 1001 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 HERVK_113Q902F9 699 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 KIFC2Q96AC6 838 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 TEX13BQ9BXU2 312 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 MTIF3Q9H2K0 278 aaKnown RBP10.97□□□□□ -0.65
CCDC171-209ENST00000498725 HIPK3Q9H422 1215 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 KANSL2Q9H9L4 492 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 HOMER2Q9NSB8 354 aa10.97□□□□□ -0.65
CCDC171-209ENST00000498725 ISY1Q9ULR0 285 aaKnown RBP10.97□□□□□ -0.65
CCDC171-209ENST00000498725 DNAJC25-GNG10A0A024R161 153 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 ZBED4O75132 1171 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 RLBP1P12271 317 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 CST5P28325 142 aaPredicted RBP10.96□□□□□ -0.65
CCDC171-209ENST00000498725 GJA9P57773 515 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 CNTN2Q02246 1040 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 CEP85Q6P2H3 762 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 TMED8Q6PL24 325 aaPredicted RBP10.96□□□□□ -0.65
CCDC171-209ENST00000498725 MAMDC4Q6UXC1 1216 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 ARMCX2Q7L311 632 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 MSL3Q8N5Y2 521 aaKnown RBP10.96□□□□□ -0.65
CCDC171-209ENST00000498725 RHPN1Q8TCX5 695 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 DDRGK1Q96HY6 314 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 SCLYQ96I15 445 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 TRPV6Q9H1D0 765 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 UPF3AQ9H1J1 476 aaKnown RBP10.96□□□□□ -0.65
CCDC171-209ENST00000498725 ABHD16BQ9H3Z7 469 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 ATP8A2Q9NTI2 1148 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 SLC4A7Q9Y6M7 1214 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 SLC4A4Q9Y6R1 1079 aa10.96□□□□□ -0.65
CCDC171-209ENST00000498725 DDX49Q9Y6V7 483 aaKnown RBP10.96□□□□□ -0.65
CCDC171-209ENST00000498725 MUC3AQ02505 3323 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 CD4P01730 458 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 IFIT2P09913 472 aaKnown RBP10.95□□□□□ -0.66
CCDC171-209ENST00000498725 BMP1P13497 986 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 ADD2P35612 726 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 PSMC6P62333 389 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 TNFAIP2Q03169 654 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 KRT40Q6A162 431 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 CTR9Q6PD62 1173 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 CCDC144CPQ8IYA2 1237 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 PRPF38AQ8NAV1 312 aaKnown RBP10.95□□□□□ -0.66
CCDC171-209ENST00000498725 FGD4Q96M96 766 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 C1QTNF1Q9BXJ1 281 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 BOLA2Q9H3K6 86 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 EPHX3Q9H6B9 360 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 PAG1Q9NWQ8 432 aa10.95□□□□□ -0.66
CCDC171-209ENST00000498725 COL4A4P53420 1690 aaPredicted RBP10.95□□□□□ -0.66
CCDC171-209ENST00000498725 ASTN1O14525 1302 aa10.94□□□□□ -0.66
CCDC171-209ENST00000498725 F5H6K3 240 aa10.94□□□□□ -0.66
CCDC171-209ENST00000498725 CTAGE5O15320 804 aa10.94□□□□□ -0.66
CCDC171-209ENST00000498725 NDUFB10O96000 172 aa10.94□□□□□ -0.66
CCDC171-209ENST00000498725 KLRC3Q07444 240 aa10.94□□□□□ -0.66
CCDC171-209ENST00000498725 ITGA7Q13683 1181 aa10.94□□□□□ -0.66
CCDC171-209ENST00000498725 DEFB128Q7Z7B8 93 aa10.94□□□□□ -0.66
CCDC171-209ENST00000498725 CLASRPQ8N2M8 674 aaKnown RBP10.94□□□□□ -0.66
CCDC171-209ENST00000498725 LRFN3Q9BTN0 628 aa10.94□□□□□ -0.66
CCDC171-209ENST00000498725 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.94□□□□□ -0.66
CCDC171-209ENST00000498725 MKNK2Q9HBH9 465 aa10.94□□□□□ -0.66
CCDC171-209ENST00000498725 CLIP2Q9UDT6 1046 aa10.94□□□□□ -0.66
CCDC171-209ENST00000498725 FAM86C2PA6NEL3 165 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 MINDY4BA8MYZ0 360 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 DYNC1LI2O43237 492 aaPredicted RBP10.93□□□□□ -0.66
CCDC171-209ENST00000498725 B4GALT4O60513 344 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 ATP2A2P16615 1042 aaKnown RBP10.93□□□□□ -0.66
CCDC171-209ENST00000498725 AAK1Q2M2I8 961 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 EEPD1Q7L9B9 569 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 ZNF467Q7Z7K2 595 aaPredicted RBP10.93□□□□□ -0.66
CCDC171-209ENST00000498725 TLK2Q86UE8 772 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 PPP1R13LQ8WUF5 828 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 NOC4LQ9BVI4 516 aaKnown RBP10.93□□□□□ -0.66
CCDC171-209ENST00000498725 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.93□□□□□ -0.66
CCDC171-209ENST00000498725 AP5M1Q9H0R1 490 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 WNT8AQ9H1J5 351 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 HCN4Q9Y3Q4 1203 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 PCDHA11Q9Y5I1 949 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 LCTP09848 1927 aa10.93□□□□□ -0.66
CCDC171-209ENST00000498725 CHD7Q9P2D1 2997 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms