RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 PPP1R3GB7ZBB8 358 aa18.47■□□□□ 0.55
COL6A1-206ENST00000498614 VSNL1P62760 191 aa18.47■□□□□ 0.55
COL6A1-206ENST00000498614 DPYDQ12882 1025 aa18.47■□□□□ 0.55
COL6A1-206ENST00000498614 SH3RF1Q7Z6J0 888 aa18.47■□□□□ 0.55
COL6A1-206ENST00000498614 BMP15O95972 392 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 ACTN2P35609 894 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 ERVK-24P63145 666 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 FILIP1LQ4L180 1135 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 FAN1Q9Y2M0 1017 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 MAST2Q6P0Q8 1798 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 COL24A1Q17RW2 1714 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 TRIM66O15016 1216 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 ERLIN1O75477 346 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 FECHP22830 423 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 CCT6AP40227 531 aaKnown RBP18.46■□□□□ 0.55
COL6A1-206ENST00000498614 ATP2C1P98194 919 aaPredicted RBP18.46■□□□□ 0.55
COL6A1-206ENST00000498614 TUBB2AQ13885 445 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 SBK1Q52WX2 424 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 CT47A1Q5JQC4 288 aaPredicted RBP18.46■□□□□ 0.55
COL6A1-206ENST00000498614 RCSD1Q6JBY9 416 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 CNGA4Q8IV77 575 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 CTAGE1Q96RT6 745 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 TUBB2BQ9BVA1 445 aa18.46■□□□□ 0.55
COL6A1-206ENST00000498614 CWC15Q9P013 229 aaKnown RBP18.46■□□□□ 0.55
COL6A1-206ENST00000498614 RNF225M0QZC1 329 aaPredicted RBP18.45■□□□□ 0.54
COL6A1-206ENST00000498614 CDC25AP30304 524 aa18.45■□□□□ 0.54
COL6A1-206ENST00000498614 MCM7P33993 719 aa18.45■□□□□ 0.54
COL6A1-206ENST00000498614 ARHGAP25P42331 645 aa18.45■□□□□ 0.54
COL6A1-206ENST00000498614 PFKFB3Q16875 520 aaPredicted RBP18.45■□□□□ 0.54
COL6A1-206ENST00000498614 ILDR2Q71H61 639 aa18.45■□□□□ 0.54
COL6A1-206ENST00000498614 NAPGQ99747 312 aaPredicted RBP18.45■□□□□ 0.54
COL6A1-206ENST00000498614 TTF2Q9UNY4 1162 aaKnown RBP18.45■□□□□ 0.54
COL6A1-206ENST00000498614 CTNND2Q9UQB3 1225 aa18.45■□□□□ 0.54
COL6A1-206ENST00000498614 MYO1CO00159 1063 aa18.45■□□□□ 0.54
COL6A1-206ENST00000498614 DYNLL2Q96FJ2 89 aa18.45■□□□□ 0.54
COL6A1-206ENST00000498614 TFAP4Q01664 338 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 IQUBQ8NA54 791 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 NOA1Q8NC60 698 aaKnown RBP18.44■□□□□ 0.54
COL6A1-206ENST00000498614 CCDC51Q96ER9 411 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 KAT14Q9H8E8 782 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 ITIH6Q6UXX5 1313 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 CTAGE15A4D2H0 777 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 EIF3JO75822 258 aaKnown RBP18.44■□□□□ 0.54
COL6A1-206ENST00000498614 CTAGE8P0CG41 777 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 CASP8Q14790 479 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 CTAGE6Q86UF2 777 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 CTAGE4Q8IX94 777 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 C10orf67Q8IYJ2 551 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 GPKOWQ92917 476 aaPredicted RBP eCLIP18.44■□□□□ 0.54
COL6A1-206ENST00000498614 ZFP91Q96JP5 570 aaPredicted RBP18.44■□□□□ 0.54
COL6A1-206ENST00000498614 BLZF1Q9H2G9 400 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 ANKIB1Q9P2G1 1089 aa18.44■□□□□ 0.54
COL6A1-206ENST00000498614 TNRC6CQ9HCJ0 1690 aaKnown RBP18.43■□□□□ 0.54
COL6A1-206ENST00000498614 R3HDM1Q15032 1099 aaKnown RBP18.43■□□□□ 0.54
COL6A1-206ENST00000498614 KRT31Q15323 416 aa18.43■□□□□ 0.54
COL6A1-206ENST00000498614 IL17AQ16552 155 aa18.43■□□□□ 0.54
COL6A1-206ENST00000498614 WHAMMP3Q1A5X7 153 aa18.43■□□□□ 0.54
COL6A1-206ENST00000498614 TMTC1Q8IUR5 882 aa18.43■□□□□ 0.54
COL6A1-206ENST00000498614 MSL3Q8N5Y2 521 aaKnown RBP18.43■□□□□ 0.54
COL6A1-206ENST00000498614 SH3RF3Q8TEJ3 882 aaPredicted RBP18.43■□□□□ 0.54
COL6A1-206ENST00000498614 GSDMAQ96QA5 445 aa18.43■□□□□ 0.54
COL6A1-206ENST00000498614 IL17RBQ9NRM6 502 aa18.43■□□□□ 0.54
COL6A1-206ENST00000498614 ABHD10Q9NUJ1 306 aa18.43■□□□□ 0.54
COL6A1-206ENST00000498614 MTMR7Q9Y216 660 aa18.43■□□□□ 0.54
COL6A1-206ENST00000498614 XDHP47989 1333 aa18.43■□□□□ 0.54
COL6A1-206ENST00000498614 IRS2Q9Y4H2 1338 aa18.43■□□□□ 0.54
COL6A1-206ENST00000498614 DIXDC1Q155Q3 683 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 SRLQ86TD4 932 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 STAG2Q8N3U4 1231 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 GPR101Q96P66 508 aaPredicted RBP18.42■□□□□ 0.54
COL6A1-206ENST00000498614 VPS16Q9H269 839 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 RASSF4Q9H2L5 321 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 ZBTB7AO95365 584 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 LDHBP07195 334 aaKnown RBP18.42■□□□□ 0.54
COL6A1-206ENST00000498614 KIF5BP33176 963 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 TUBB4BP68371 445 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 GRIK5Q16478 980 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 C12orf60Q5U649 245 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 SPTY2D1Q68D10 685 aaPredicted RBP18.42■□□□□ 0.54
COL6A1-206ENST00000498614 LEKR1Q6ZMV7 388 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 PNMA1Q8ND90 353 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 RASGRP4Q8TDF6 673 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 SLF1Q9BQI6 1058 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 RRP15Q9Y3B9 282 aaKnown RBP18.42■□□□□ 0.54
COL6A1-206ENST00000498614 FAM205AQ6ZU69 1335 aa18.42■□□□□ 0.54
COL6A1-206ENST00000498614 N4BP3O15049 544 aa18.41■□□□□ 0.54
COL6A1-206ENST00000498614 NCAPH2Q6IBW4 605 aa18.41■□□□□ 0.54
COL6A1-206ENST00000498614 FOXR1Q6PIV2 292 aa18.41■□□□□ 0.54
COL6A1-206ENST00000498614 USP17L3A6NCW0 530 aa18.41■□□□□ 0.54
COL6A1-206ENST00000498614 USP17L4A6NCW7 530 aa18.41■□□□□ 0.54
COL6A1-206ENST00000498614 AMPD2Q01433 879 aa18.41■□□□□ 0.54
COL6A1-206ENST00000498614 E2F4Q16254 413 aa18.41■□□□□ 0.54
COL6A1-206ENST00000498614 USP17L1Q7RTZ2 530 aa18.41■□□□□ 0.54
COL6A1-206ENST00000498614 TAB2Q9NYJ8 693 aa18.41■□□□□ 0.54
COL6A1-206ENST00000498614 LIMA1Q9UHB6 759 aaKnown RBP18.41■□□□□ 0.54
COL6A1-206ENST00000498614 LRRIQ3A6PVS8 624 aaPredicted RBP18.4■□□□□ 0.54
COL6A1-206ENST00000498614 PHACTR2O75167 634 aa18.4■□□□□ 0.54
COL6A1-206ENST00000498614 BLIDQ8IZY5 108 aa18.4■□□□□ 0.54
COL6A1-206ENST00000498614 CCDC102AQ96A19 550 aa18.4■□□□□ 0.54
COL6A1-206ENST00000498614 NUP88Q99567 741 aaPredicted RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms