RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TCP11X2Q5H9J9 407 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ANKS1AQ92625 1134 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 GOLGA1Q92805 767 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ZFP91Q96JP5 570 aaPredicted RBP18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 SH3GLB2Q9NR46 395 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 TAB2Q9NYJ8 693 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 PCDHA4Q9UN74 947 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 JAG2Q9Y219 1238 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 NRXN2Q9P2S2 1712 aa18.14■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ABL1P00519 1130 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 PRCPP42785 496 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 FAM193AP78312 1265 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 TFAP4Q01664 338 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 SLC4A8Q2Y0W8 1093 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 IRF2BP1Q8IU81 584 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ACRBPQ8NEB7 543 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 RASGRP4Q8TDF6 673 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 RPGRQ92834 1020 aaKnown RBP18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 GPR101Q96P66 508 aaPredicted RBP18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ANKRD2Q9GZV1 360 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ABHD10Q9NUJ1 306 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 MCM9Q9NXL9 1143 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 KCNJ18B7U540 433 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 RGL2O15211 777 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 SPAG1Q07617 926 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 KCNJ12Q14500 433 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 NAALADL2Q58DX5 795 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 C12orf60Q5U649 245 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 DGKHQ86XP1 1220 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 TMTC1Q8IUR5 882 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 NLGN2Q8NFZ4 835 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 SLC16A10Q8TF71 515 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 SGIP1Q9BQI5 828 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 KAT14Q9H8E8 782 aa18.13■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 KIF5CO60282 957 aa18.12■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 POLD1P28340 1107 aa18.12■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ZNF569Q5MCW4 686 aa18.12■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 SRGAP1Q7Z6B7 1085 aa18.12■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 C2CD5Q86YS7 1000 aa18.12■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 PNMA1Q8ND90 353 aa18.12■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 RMND1Q9NWS8 449 aa18.12■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 CDC23Q9UJX2 597 aa18.12■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 MAPK8IP1Q9UQF2 711 aa18.12■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 TXLNAP40222 546 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 GRM4Q14833 912 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 DYNLL2Q96FJ2 89 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 TMEM60Q9H2L4 133 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 DISC1Q9NRI5 854 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 MAD2L2Q9UI95 211 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ZBTB22O15209 634 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 STAT6P42226 847 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ARHGAP25P42331 645 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 IRX3P78415 501 aaPredicted RBP18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 TMED8Q6PL24 325 aaPredicted RBP18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ADSSL1Q8N142 457 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 PCDHA6Q9UN73 950 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 TTF2Q9UNY4 1162 aaKnown RBP18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 PCDHA8Q9Y5H6 950 aa18.11■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 PP2D1A8MPX8 630 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 SRGNP10124 158 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 DPEP1P16444 411 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 BRD2P25440 801 aaKnown RBP18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 SLC35F6Q8N357 371 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ZSWIM4Q9H7M6 989 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 TRIM49BA6NDI0 452 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 CYTH3O43739 400 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 KLRC4O43908 158 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 PMS1P54277 932 aaKnown RBP18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 CHMP4BP1P59074 171 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 IRX5P78411 483 aaPredicted RBP18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 WWC2Q6AWC2 1192 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 CREBRFQ8IUR6 639 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 FUT8Q9BYC5 575 aa18.1■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 SLX4Q8IY92 1834 aa18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 H7C1D1 291 aa18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 TRIM14Q14142 442 aa18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 CYP26C1Q6V0L0 522 aa18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 DZIP1Q86YF9 867 aaKnown RBP18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 DAGLBQ8NCG7 672 aa18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 LRRC15Q8TF66 581 aa18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 NUP88Q99567 741 aaPredicted RBP18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ANKZF1Q9H8Y5 726 aa18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 PUF60Q9UHX1 559 aaKnown RBP18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ROBO3Q96MS0 1386 aa18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 MYH1P12882 1939 aa18.09■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 USP17L3A6NCW0 530 aa18.08■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 USP17L4A6NCW7 530 aa18.08■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 PARP1P09874 1014 aaKnown RBP18.08■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 CRY2Q49AN0 593 aa18.08■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 DTHD1Q6ZMT9 781 aa18.08■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 USP17L1Q7RTZ2 530 aa18.08■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 SH3RF3Q8TEJ3 882 aaPredicted RBP18.08■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 ARFGAP3Q9NP61 516 aa18.08■□□□□ 0.49
MSH5-SAPCD1-208ENST00000498473 KRT9P35527 623 aa18.08■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 KCNB1Q14721 858 aa18.08■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 SPTY2D1Q68D10 685 aaPredicted RBP18.08■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CEP112Q8N8E3 955 aa18.08■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 ANKRD20A12PQ8NF67 263 aa18.08■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CHP1Q99653 195 aa18.08■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 SPON1Q9HCB6 807 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms