RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	AGBL1	Q96MI9	1066 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	XPNPEP3	Q9NQH7	507 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	ISY1	Q9ULR0	285 aa	Known RBP	13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	MTMR7	Q9Y216	660 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	ZMYM6	O95789	1325 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	CCDC171	Q6TFL3	1326 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	SYNRG	Q9UMZ2	1314 aa		13.81	□□□□□ -0.2
VTI1A-208	ENST00000494728	TRIM6-TRIM34	B2RNG4	842 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	ZBED4	O75132	1171 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	PTGS1	P23219	599 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	NUCB1	Q02818	461 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	MCMDC2	Q4G0Z9	681 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	MAMDC4	Q6UXC1	1216 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	SLC39A5	Q6ZMH5	540 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	SH3RF1	Q7Z6J0	888 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	CHD1L	Q86WJ1	897 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	ARRDC4	Q8NCT1	418 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	UBE2O	Q9C0C9	1292 aa	Known RBP	13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	KATNBL1	Q9H079	304 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	PDLIM7	Q9NR12	457 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	NRBP1	Q9UHY1	535 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	PHF24	Q9UPV7	400 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	NEDD4	P46934	1319 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	SYNGAP1	Q96PV0	1343 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	CHD7	Q9P2D1	2997 aa		13.8	□□□□□ -0.2
VTI1A-208	ENST00000494728	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	RARB	P10826	455 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	AKR1A1	P14550	325 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	ITGB8	P26012	769 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	SLC1A4	P43007	532 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	OAZ1	P54368	228 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	CNTN2	Q02246	1040 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	RRP12	Q5JTH9	1297 aa	Known RBP	13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	CCDC174	Q6PII3	467 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728		Q7L0L9	218 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	RILPL2	Q969X0	211 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	DDX11	Q96FC9	970 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	IL25	Q9H293	177 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	A1CF	Q9NQ94	594 aa	Known RBP	13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	RNF146	Q9NTX7	359 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728	PRR12	Q9ULL5	1215 aa		13.79	□□□□□ -0.2
VTI1A-208	ENST00000494728		A0A1W2PQ45	241 aa	Predicted RBP	13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728		A0A1W2PQY0	241 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	SOWAHB	A6NEL2	793 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	LRIT3	Q3SXY7	679 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	MUM1L1	Q5H9M0	696 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	TTBK2	Q6IQ55	1244 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	RCSD1	Q6JBY9	416 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	ARMCX2	Q7L311	632 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	ANKRD35	Q8N283	1001 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	FAM133A	Q8N9E0	248 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	CHST13	Q8NET6	341 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	STAG1	Q8WVM7	1258 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	PURB	Q96QR8	312 aa	Known RBP	13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	CNPY2	Q9Y2B0	182 aa		13.78	□□□□□ -0.2
VTI1A-208	ENST00000494728	TRIM43B	A6NCK2	446 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	REV3L	O60673	3130 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	PLA2G6	O60733	806 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	SDS	P20132	328 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	PDE4A	P27815	886 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	SLC16A2	P36021	539 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	IK	Q13123	557 aa	Predicted RBP	13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	CCDC96	Q2M329	555 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	FAM160B2	Q86V87	743 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	CCDC144CP	Q8IYA2	1237 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	MSL3	Q8N5Y2	521 aa	Known RBP	13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	TMEM47	Q9BQJ4	181 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	RWDD1	Q9H446	243 aa	Predicted RBP	13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	OSBPL3	Q9H4L5	887 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	ACAD9	Q9H845	621 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	TOMM22	Q9NS69	142 aa		13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.77	□□□□□ -0.21
VTI1A-208	ENST00000494728	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	CTAGE5	O15320	804 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	ALAS1	P13196	640 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	TLE2	Q04725	743 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	AAMP	Q13685	434 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	ACVR2B	Q13705	512 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	CCDC144B	Q3MJ40	725 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	C9orf50	Q5SZB4	431 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	TMEM63B	Q5T3F8	832 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	C1orf53	Q5VUE5	145 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	RNF180	Q86T96	592 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	KLHDC9	Q8NEP7	349 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	FBXO40	Q9UH90	709 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	GBF1	Q92538	1859 aa		13.76	□□□□□ -0.21
VTI1A-208	ENST00000494728	AKNAD1	Q5T1N1	836 aa		13.75	□□□□□ -0.21
VTI1A-208	ENST00000494728	CWC27	Q6UX04	472 aa	Known RBP	13.75	□□□□□ -0.21
VTI1A-208	ENST00000494728	CHURC1	Q8WUH1	139 aa		13.75	□□□□□ -0.21
VTI1A-208	ENST00000494728	DCAF4	Q8WV16	495 aa		13.75	□□□□□ -0.21
VTI1A-208	ENST00000494728	BAD	Q92934	168 aa		13.75	□□□□□ -0.21
VTI1A-208	ENST00000494728	TRERF1	Q96PN7	1200 aa		13.75	□□□□□ -0.21

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