RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 KAZALD1Q96I82 304 aa18.08■□□□□ 0.49
CCDC88B-209ENST00000494080 NEDD4P46934 1319 aa18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 E7EVH7 732 aa18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 MMP1P03956 469 aa18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 DLGAP5Q15398 846 aa18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 TBC1D9BQ66K14 1250 aa18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 PAF1Q8N7H5 531 aa18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 UBLCP1Q8WVY7 318 aaPredicted RBP18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 ARHGEF28Q8N1W1 1705 aaKnown RBP18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 CCDC172P0C7W6 258 aa18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 PCP11498 1178 aaKnown RBP18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 CEP85LQ5SZL2 805 aa18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 MAEAQ7L5Y9 396 aa18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 SELENOOQ9BVL4 669 aa18.08■□□□□ 0.48
CCDC88B-209ENST00000494080 PNMA8AQ86V59 439 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 FNBP4Q8N3X1 1017 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 CCDC51Q96ER9 411 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 DBNDD1Q9H9R9 158 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 PCDHB6Q9Y5E3 794 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 AK9Q5TCS8 1911 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 USP17L3A6NCW0 530 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 USP17L4A6NCW7 530 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 DDX39AO00148 427 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 CASP14P31944 242 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 CETN2P41208 172 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 TNNC1P63316 161 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 CCZ1BP86790 482 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 CCZ1P86791 482 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 KIAA0753Q2KHM9 967 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 E4F1Q66K89 784 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 USP17L1Q7RTZ2 530 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 TBC1D5Q92609 795 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 RPGRIP1Q96KN7 1286 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 TCHPQ9BT92 498 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 GOLPH3LQ9H4A5 285 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 PPANQ9NQ55 473 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 FEZ2Q9UHY8 353 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 LOC102724159A0A0B4J2E5 919 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 SOWAHDA6NJG2 315 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 AP5Z1O43299 807 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 CYP2D6P10635 497 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 PWP2Q15269 919 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 HOMER2Q9NSB8 354 aa18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 USP42Q9H9J4 1324 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-209ENST00000494080 ECM2O94769 699 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 HAUS3Q68CZ6 603 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 SMYD4Q8IYR2 804 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 CCDC155Q8N6L0 562 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 TSGA10Q9BZW7 698 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 NSRP1Q9H0G5 558 aaKnown RBP18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 COL15A1P39059 1388 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 PPP6R2O75170 966 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 IFT20Q8IY31 132 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 OR8K1Q8NGG5 319 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 USP32Q8NFA0 1604 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 NEURL4Q96JN8 1562 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 NEK8Q86SG6 692 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 NAP1L4Q99733 375 aaKnown RBP18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 TAOK3Q9H2K8 898 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 PPFIA4O75335 1185 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 PLEKHA8P1O95397 391 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 MYCNP04198 464 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 ARMCX5Q6P1M9 558 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 MB21D2Q8IYB1 491 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 SH2D4AQ9H788 454 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 BAIAP2L1Q9UHR4 511 aa18.06■□□□□ 0.48
CCDC88B-209ENST00000494080 NEBLO76041 1014 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 RFX5P48382 616 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 IQCB1Q15051 598 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 IFI16Q16666 785 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 PSTPIP2Q9H939 334 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 BACH1O14867 736 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 CERKLQ49MI3 558 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 USP17L2Q6R6M4 530 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 NARFQ9UHQ1 456 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 ZNF609O15014 1411 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 PPEF1O14829 653 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 TADA3O75528 432 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 BBOX1O75936 387 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 OR52Z1P0C646 297 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 PRKG1Q13976 671 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 KCTD16Q68DU8 428 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 KIFC2Q96AC6 838 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 TCP10L2B9ZVM9 353 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 SARNPP82979 210 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 SAMD15Q9P1V8 674 aa18.05■□□□□ 0.48
CCDC88B-209ENST00000494080 RPL13P26373 211 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 PPP1R2P41236 205 aa18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 GRAPQ13588 217 aa18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 GRAPLQ8TC17 118 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 GLT8D2Q9H1C3 349 aa18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 FAM207AQ9NSI2 230 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 EPN1Q9Y6I3 576 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 CPDO75976 1380 aa18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 CETN3O15182 167 aa18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 BUB1BO60566 1050 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 KIF4AO95239 1232 aa18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 NSMFQ6X4W1 530 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms