RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 CCND3P30281 292 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-214ENST00000493608 GRB14Q14449 540 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 UBE2Q1Q7Z7E8 422 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 DPP9Q86TI2 863 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 MB21D1Q8N884 522 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 NEDD1Q8NHV4 660 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 DIS3LQ8TF46 1054 aaKnown RBP12.66□□□□□ -0.38
COL6A3-214ENST00000493608 APBA2Q99767 749 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 OSBPL3Q9H4L5 887 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 RABGEF1Q9UJ41 708 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 PPP1R9AQ9ULJ8 1098 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 VWA5AO00534 786 aa12.65□□□□□ -0.38
COL6A3-214ENST00000493608 NMT2O60551 498 aa12.65□□□□□ -0.38
COL6A3-214ENST00000493608 TTLL1O95922 423 aa12.65□□□□□ -0.38
COL6A3-214ENST00000493608 HSPD1P10809 573 aaKnown RBP12.65□□□□□ -0.38
COL6A3-214ENST00000493608 CYP2C19P33261 490 aa12.65□□□□□ -0.38
COL6A3-214ENST00000493608 SLC4A3P48751 1232 aa12.65□□□□□ -0.38
COL6A3-214ENST00000493608 HAND2P61296 217 aa12.65□□□□□ -0.38
COL6A3-214ENST00000493608 MAP3K21Q5TCX8 1036 aa12.65□□□□□ -0.38
COL6A3-214ENST00000493608 TRMT44Q8IYL2 757 aaKnown RBP12.65□□□□□ -0.38
COL6A3-214ENST00000493608 MKL1Q969V6 931 aa12.65□□□□□ -0.38
COL6A3-214ENST00000493608 PAWRQ96IZ0 340 aaKnown RBP12.65□□□□□ -0.38
COL6A3-214ENST00000493608 NBPF3Q9H094 633 aa12.65□□□□□ -0.38
COL6A3-214ENST00000493608 ISY1Q9ULR0 285 aaKnown RBP12.65□□□□□ -0.38
COL6A3-214ENST00000493608 ADAMTS5Q9UNA0 930 aa12.65□□□□□ -0.38
COL6A3-214ENST00000493608 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.65□□□□□ -0.38
COL6A3-214ENST00000493608 TSPY2A6NKD2 308 aa12.64□□□□□ -0.39
COL6A3-214ENST00000493608 RANBP6O60518 1105 aaKnown RBP12.64□□□□□ -0.39
COL6A3-214ENST00000493608 COBLO75128 1261 aa12.64□□□□□ -0.39
COL6A3-214ENST00000493608 STAT3P40763 770 aa12.64□□□□□ -0.39
COL6A3-214ENST00000493608 ALX1Q15699 326 aa12.64□□□□□ -0.39
COL6A3-214ENST00000493608 RRP12Q5JTH9 1297 aaKnown RBP12.64□□□□□ -0.39
COL6A3-214ENST00000493608 CWC27Q6UX04 472 aaKnown RBP12.64□□□□□ -0.39
COL6A3-214ENST00000493608 THSD4Q6ZMP0 1018 aa12.64□□□□□ -0.39
COL6A3-214ENST00000493608 SHCBP1Q8NEM2 672 aa12.64□□□□□ -0.39
COL6A3-214ENST00000493608 SLF1Q9BQI6 1058 aa12.64□□□□□ -0.39
COL6A3-214ENST00000493608 TOMM22Q9NS69 142 aa12.64□□□□□ -0.39
COL6A3-214ENST00000493608 WDR70Q9NW82 654 aa12.64□□□□□ -0.39
COL6A3-214ENST00000493608 PLA2G2EQ9NZK7 142 aa12.64□□□□□ -0.39
COL6A3-214ENST00000493608 MTMR7Q9Y216 660 aa12.64□□□□□ -0.39
COL6A3-214ENST00000493608 CCDC171Q6TFL3 1326 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 SMCHD1A6NHR9 2005 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 H0YGN5 161 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 STRNO43815 780 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 PGK2P07205 417 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 HOXC6P09630 235 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 CNGA1P29973 690 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 MFSD14CQ5VZR4 134 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 SLFN13Q68D06 897 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 CPXCR1Q8N123 301 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 REPS2Q8NFH8 660 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 KIFC2Q96AC6 838 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 HTATIP2Q9BUP3 242 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 MROH8Q9H579 483 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 IL17RBQ9NRM6 502 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 ANAPC4Q9UJX5 808 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 STX8Q9UNK0 236 aa12.63□□□□□ -0.39
COL6A3-214ENST00000493608 ALPK3Q96L96 1907 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 PLXNA1Q9UIW2 1896 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 SLC25A27O95847 323 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 FCER1AP12319 257 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 BMP3P12645 472 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 MCCP23508 829 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 PRAMEF19Q5SWL8 479 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 NECAB2Q7Z6G3 386 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 RIOX2Q8IUF8 465 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 PRPF38AQ8NAV1 312 aaKnown RBP12.62□□□□□ -0.39
COL6A3-214ENST00000493608 TRPV1Q8NER1 839 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 MMP19Q99542 508 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 RAVER2Q9HCJ3 691 aaKnown RBP12.62□□□□□ -0.39
COL6A3-214ENST00000493608 ZNF214Q9UL59 606 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-214ENST00000493608 OGDHLQ9ULD0 1010 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 RIPK3Q9Y572 518 aa12.62□□□□□ -0.39
COL6A3-214ENST00000493608 CTDP1Q9Y5B0 961 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-214ENST00000493608 PLIN4Q96Q06 1357 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 TMEM232C9JQI7 657 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 ORC4O43929 436 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 ZBED4O75132 1171 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 SNAP25P60880 206 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 IKQ13123 557 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-214ENST00000493608 NBR1Q14596 966 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 ANO1Q5XXA6 986 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 SNRNP48Q6IEG0 339 aaKnown RBP12.61□□□□□ -0.39
COL6A3-214ENST00000493608 RASGRP2Q7LDG7 609 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 TICAM2Q86XR7 235 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 GMCL1P1Q8NEA9 526 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 WNT2BQ93097 391 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 DIAPH3Q9NSV4 1193 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 FEM1BQ9UK73 627 aa12.61□□□□□ -0.39
COL6A3-214ENST00000493608 FRMPD3Q5JV73 1810 aa12.6□□□□□ -0.39
COL6A3-214ENST00000493608 FGRP09769 529 aa12.6□□□□□ -0.39
COL6A3-214ENST00000493608 GSPT1P15170 499 aaKnown RBP12.6□□□□□ -0.39
COL6A3-214ENST00000493608 SLC1A4P43007 532 aa12.6□□□□□ -0.39
COL6A3-214ENST00000493608 KCTD1Q719H9 257 aa12.6□□□□□ -0.39
COL6A3-214ENST00000493608 ABRAQ8N0Z2 381 aa12.6□□□□□ -0.39
COL6A3-214ENST00000493608 MAML3Q96JK9 1138 aa12.6□□□□□ -0.39
COL6A3-214ENST00000493608 C11orf49Q9H6J7 331 aa12.6□□□□□ -0.39
COL6A3-214ENST00000493608 SLC5A4Q9NY91 659 aa12.6□□□□□ -0.39
COL6A3-214ENST00000493608 ZNF236Q9UL36 1845 aa12.6□□□□□ -0.39
COL6A3-214ENST00000493608 IGHA2P01877 340 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms