RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ZNF543Q08ER8 600 aa28.99■■■□□ 2.23
UPF3A-209ENST00000492270 CYB5R4Q7L1T6 521 aa28.99■■■□□ 2.23
UPF3A-209ENST00000492270 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.99■■■□□ 2.23
UPF3A-209ENST00000492270 CHST13Q8NET6 341 aa28.99■■■□□ 2.23
UPF3A-209ENST00000492270 DDX11Q96FC9 970 aa28.99■■■□□ 2.23
UPF3A-209ENST00000492270 DDX20Q9UHI6 824 aaKnown RBP28.99■■■□□ 2.23
UPF3A-209ENST00000492270 DNAJC25-GNG10A0A024R161 153 aa28.98■■■□□ 2.23
UPF3A-209ENST00000492270 BMP2KLQ5H9B9 411 aa28.98■■■□□ 2.23
UPF3A-209ENST00000492270 SYDE2Q5VT97 1194 aa28.98■■■□□ 2.23
UPF3A-209ENST00000492270 PNMA1Q8ND90 353 aa28.98■■■□□ 2.23
UPF3A-209ENST00000492270 RNF146Q9NTX7 359 aa28.98■■■□□ 2.23
UPF3A-209ENST00000492270 FBXO40Q9UH90 709 aa28.98■■■□□ 2.23
UPF3A-209ENST00000492270 DIS3Q9Y2L1 958 aaKnown RBP28.98■■■□□ 2.23
UPF3A-209ENST00000492270 CEP290O15078 2479 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 ALAS1P13196 640 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 CCDC178Q5BJE1 867 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 NECAB2Q7Z6G3 386 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 ANKRD35Q8N283 1001 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 ANKS1AQ92625 1134 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 DPF3Q92784 378 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 MAP4K1Q92918 833 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 TINF2Q9BSI4 451 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 ESYT1Q9BSJ8 1104 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 HTATIP2Q9BUP3 242 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 RANBP17Q9H2T7 1088 aaKnown RBP28.97■■■□□ 2.23
UPF3A-209ENST00000492270 KAT14Q9H8E8 782 aa28.97■■■□□ 2.23
UPF3A-209ENST00000492270 GOLGA8HP0CJ92 632 aa28.96■■■□□ 2.23
UPF3A-209ENST00000492270 ANO1Q5XXA6 986 aa28.96■■■□□ 2.23
UPF3A-209ENST00000492270 STOX1Q6ZVD7 989 aa28.96■■■□□ 2.23
UPF3A-209ENST00000492270 ACAD9Q9H845 621 aa28.96■■■□□ 2.23
UPF3A-209ENST00000492270 RBM8AQ9Y5S9 174 aaKnown RBP28.96■■■□□ 2.23
UPF3A-209ENST00000492270 FGD4Q96M96 766 aa28.95■■■□□ 2.22
UPF3A-209ENST00000492270 TRERF1Q96PN7 1200 aa28.95■■■□□ 2.22
UPF3A-209ENST00000492270 UBAC1Q9BSL1 405 aa28.95■■■□□ 2.22
UPF3A-209ENST00000492270 LSG1Q9H089 658 aaKnown RBP28.95■■■□□ 2.22
UPF3A-209ENST00000492270 CPVLQ9H3G5 476 aa28.95■■■□□ 2.22
UPF3A-209ENST00000492270 CCPG1Q9ULG6 757 aa28.95■■■□□ 2.22
UPF3A-209ENST00000492270 LRRC37A2A6NM11 1700 aa28.94■■■□□ 2.22
UPF3A-209ENST00000492270 E7EWF7 191 aa28.94■■■□□ 2.22
UPF3A-209ENST00000492270 MUM1L1Q5H9M0 696 aa28.94■■■□□ 2.22
UPF3A-209ENST00000492270 A1CFQ9NQ94 594 aaKnown RBP28.94■■■□□ 2.22
UPF3A-209ENST00000492270 SEPT4O43236 478 aa28.93■■■□□ 2.22
UPF3A-209ENST00000492270 MSCO60682 206 aa28.93■■■□□ 2.22
UPF3A-209ENST00000492270 ICAM1P05362 532 aa28.93■■■□□ 2.22
UPF3A-209ENST00000492270 NEFLP07196 543 aa28.93■■■□□ 2.22
UPF3A-209ENST00000492270 TRDNQ13061 729 aa28.93■■■□□ 2.22
UPF3A-209ENST00000492270 SEC23AQ15436 765 aa28.93■■■□□ 2.22
UPF3A-209ENST00000492270 TKFCQ3LXA3 575 aa28.93■■■□□ 2.22
UPF3A-209ENST00000492270 C11orf49Q9H6J7 331 aa28.93■■■□□ 2.22
UPF3A-209ENST00000492270 PFASO15067 1338 aa28.93■■■□□ 2.22
UPF3A-209ENST00000492270 CNTN2Q02246 1040 aa28.92■■■□□ 2.22
UPF3A-209ENST00000492270 KIAA1211Q6ZU35 1233 aa28.92■■■□□ 2.22
UPF3A-209ENST00000492270 UBA5Q9GZZ9 404 aa28.92■■■□□ 2.22
UPF3A-209ENST00000492270 GPATCH4Q5T3I0 446 aaKnown RBP28.91■■■□□ 2.22
UPF3A-209ENST00000492270 IFIT1BQ5T764 474 aaKnown RBP28.91■■■□□ 2.22
UPF3A-209ENST00000492270 H0YGN5 161 aa28.9■■■□□ 2.22
UPF3A-209ENST00000492270 SNAI1O95863 264 aaPredicted RBP28.9■■■□□ 2.22
UPF3A-209ENST00000492270 CHST3Q7LGC8 479 aa28.9■■■□□ 2.22
UPF3A-209ENST00000492270 RALYLQ86SE5 291 aaKnown RBP28.9■■■□□ 2.22
UPF3A-209ENST00000492270 ZNF865P0CJ78 1059 aaPredicted RBP28.89■■■□□ 2.22
UPF3A-209ENST00000492270 COL6A1P12109 1028 aa28.89■■■□□ 2.22
UPF3A-209ENST00000492270 MAMDC4Q6UXC1 1216 aa28.89■■■□□ 2.22
UPF3A-209ENST00000492270 ZNF467Q7Z7K2 595 aaPredicted RBP28.89■■■□□ 2.22
UPF3A-209ENST00000492270 FAM133AQ8N9E0 248 aa28.89■■■□□ 2.22
UPF3A-209ENST00000492270 NCOA7Q8NI08 942 aa28.89■■■□□ 2.22
UPF3A-209ENST00000492270 SENP2Q9HC62 589 aa28.89■■■□□ 2.22
UPF3A-209ENST00000492270 NRBP1Q9UHY1 535 aa28.89■■■□□ 2.22
UPF3A-209ENST00000492270 SYNGAP1Q96PV0 1343 aa28.89■■■□□ 2.21
UPF3A-209ENST00000492270 POTEB2H3BUK9 544 aa28.88■■■□□ 2.21
UPF3A-209ENST00000492270 NSMFQ6X4W1 530 aa28.88■■■□□ 2.21
UPF3A-209ENST00000492270 MSL3Q8N5Y2 521 aaKnown RBP28.88■■■□□ 2.21
UPF3A-209ENST00000492270 ANO2Q9NQ90 1003 aa28.88■■■□□ 2.21
UPF3A-209ENST00000492270 CNPY2Q9Y2B0 182 aa28.88■■■□□ 2.21
UPF3A-209ENST00000492270 DNAH12Q6ZR08 3092 aa28.88■■■□□ 2.21
UPF3A-209ENST00000492270 SOWAHBA6NEL2 793 aa28.87■■■□□ 2.21
UPF3A-209ENST00000492270 ANTXR2P58335 489 aa28.87■■■□□ 2.21
UPF3A-209ENST00000492270 ASPRV1Q53RT3 343 aa28.87■■■□□ 2.21
UPF3A-209ENST00000492270 GJC2Q5T442 439 aaPredicted RBP28.87■■■□□ 2.21
UPF3A-209ENST00000492270 LENG1Q96BZ8 264 aaPredicted RBP28.87■■■□□ 2.21
UPF3A-209ENST00000492270 CYP39A1Q9NYL5 469 aa28.87■■■□□ 2.21
UPF3A-209ENST00000492270 ASTN1O14525 1302 aa28.87■■■□□ 2.21
UPF3A-209ENST00000492270 NFIBO00712 420 aa28.86■■■□□ 2.21
UPF3A-209ENST00000492270 IFIT3O14879 490 aaKnown RBP28.86■■■□□ 2.21
UPF3A-209ENST00000492270 EVI5O60447 810 aa28.86■■■□□ 2.21
UPF3A-209ENST00000492270 ARMCX2Q7L311 632 aa28.86■■■□□ 2.21
UPF3A-209ENST00000492270 MB21D2Q8IYB1 491 aaPredicted RBP28.86■■■□□ 2.21
UPF3A-209ENST00000492270 PURBQ96QR8 312 aaKnown RBP28.86■■■□□ 2.21
UPF3A-209ENST00000492270 CDKN2AIPQ9NXV6 580 aaPredicted RBP28.86■■■□□ 2.21
UPF3A-209ENST00000492270 ZHX1Q9UKY1 873 aaPredicted RBP28.86■■■□□ 2.21
UPF3A-209ENST00000492270 DDX49Q9Y6V7 483 aaKnown RBP28.86■■■□□ 2.21
UPF3A-209ENST00000492270 SLC27A2O14975 620 aa28.85■■■□□ 2.21
UPF3A-209ENST00000492270 CDC45O75419 566 aa28.85■■■□□ 2.21
UPF3A-209ENST00000492270 PARP1P09874 1014 aaKnown RBP28.85■■■□□ 2.21
UPF3A-209ENST00000492270 COL9A3Q14050 684 aaPredicted RBP28.85■■■□□ 2.21
UPF3A-209ENST00000492270 CCDC144CPQ8IYA2 1237 aa28.85■■■□□ 2.21
UPF3A-209ENST00000492270 STAG2Q8N3U4 1231 aa28.85■■■□□ 2.21
UPF3A-209ENST00000492270 BAZ2BQ9UIF8 2168 aaKnown RBP28.84■■■□□ 2.21
UPF3A-209ENST00000492270 DNM1LO00429 736 aa28.84■■■□□ 2.21
UPF3A-209ENST00000492270 MYCNP04198 464 aaPredicted RBP28.84■■■□□ 2.21
UPF3A-209ENST00000492270 CDC37Q16543 378 aaPredicted RBP28.84■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms