RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 SYNPO2Q9UMS6 1093 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 CLEC11AQ9Y240 323 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 PSME4Q14997 1843 aa12.2□□□□□ -0.46
USP4-214ENST00000491791 ATRNL1Q5VV63 1379 aa12.19□□□□□ -0.46
USP4-214ENST00000491791 CCDC194A0A1B0GVG4 234 aa12.19□□□□□ -0.46
USP4-214ENST00000491791 GTPBP6O43824 516 aaPredicted RBP12.19□□□□□ -0.46
USP4-214ENST00000491791 TTLL1O95922 423 aa12.19□□□□□ -0.46
USP4-214ENST00000491791 HLA-DOAP06340 250 aa12.19□□□□□ -0.46
USP4-214ENST00000491791 PRR29P0C7W0 189 aa12.19□□□□□ -0.46
USP4-214ENST00000491791 GTF2F1P35269 517 aaKnown RBP eCLIP12.19□□□□□ -0.46
USP4-214ENST00000491791 EAPPQ56P03 285 aaPredicted RBP12.19□□□□□ -0.46
USP4-214ENST00000491791 GPATCH4Q5T3I0 446 aaKnown RBP12.19□□□□□ -0.46
USP4-214ENST00000491791 GTPBP4Q9BZE4 634 aaKnown RBP12.19□□□□□ -0.46
USP4-214ENST00000491791 XPO4Q9C0E2 1151 aaKnown RBP12.19□□□□□ -0.46
USP4-214ENST00000491791 VPS33BQ9H267 617 aa12.19□□□□□ -0.46
USP4-214ENST00000491791 CUEDC2Q9H467 287 aa12.19□□□□□ -0.46
USP4-214ENST00000491791 MAGEF1Q9HAY2 307 aa12.19□□□□□ -0.46
USP4-214ENST00000491791 ZNF277Q9NRM2 450 aaPredicted RBP12.19□□□□□ -0.46
USP4-214ENST00000491791 HACL1Q9UJ83 578 aa12.19□□□□□ -0.46
USP4-214ENST00000491791 MYH8P13535 1937 aa12.19□□□□□ -0.46
USP4-214ENST00000491791 SIPA1L1O43166 1804 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 SCN4AP35499 1836 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 TMEM88BA6NKF7 163 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 ADAMTS3O15072 1205 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 POTEIP0CG38 1075 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 POTEJP0CG39 1038 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 AKR1B1P15121 316 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 ATP2B1P20020 1258 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 HOXA7P31268 230 aaPredicted RBP12.18□□□□□ -0.46
USP4-214ENST00000491791 CCZ1BP86790 482 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 CCZ1P86791 482 aaPredicted RBP12.18□□□□□ -0.46
USP4-214ENST00000491791 ZNF543Q08ER8 600 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 CUL4BQ13620 913 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 DOK7Q18PE1 504 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 TATDN1Q6P1N9 297 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 HEATR3Q7Z4Q2 680 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 PNMA8AQ86V59 439 aaPredicted RBP12.18□□□□□ -0.46
USP4-214ENST00000491791 JDP2Q8WYK2 163 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 GPKOWQ92917 476 aaPredicted RBP eCLIP12.18□□□□□ -0.46
USP4-214ENST00000491791 IFNKQ9P0W0 207 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 NYAP2Q9P242 653 aa12.18□□□□□ -0.46
USP4-214ENST00000491791 PNMA6FA0A0J9YX94 578 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 VWA3AA6NCI4 1184 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 SMCO2A6NFE2 343 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 USP17L5A8MUK1 530 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 ENTPD3O75355 529 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 TUBB4AP04350 444 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 EPHX2P34913 555 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 LRMPQ12912 555 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 NONOQ15233 471 aaKnown RBP eCLIP12.17□□□□□ -0.46
USP4-214ENST00000491791 SPATA1Q5VX52 437 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 USP17L2Q6R6M4 530 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 DTHD1Q6ZMT9 781 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 VSTM4Q8IW00 320 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 NAP1L5Q96NT1 182 aaPredicted RBP12.17□□□□□ -0.46
USP4-214ENST00000491791 MED15Q96RN5 788 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 GLT8D2Q9H1C3 349 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 TMX1Q9H3N1 280 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 RMND1Q9NWS8 449 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 PI4KBQ9UBF8 816 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 SEC63Q9UGP8 760 aaKnown RBP12.17□□□□□ -0.46
USP4-214ENST00000491791 CNTNAP1P78357 1384 aa12.17□□□□□ -0.46
USP4-214ENST00000491791 PASKQ96RG2 1323 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 SCN9AQ15858 1988 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 ADAMTSL1Q8N6G6 1762 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 LRRC10BA6NIK2 292 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 PPP1R3GB7ZBB8 358 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 G3V3G9 751 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 SLC26A4O43511 780 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 ECE2O60344 883 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 ATP1A3P13637 1013 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 LMOD1P29536 600 aaPredicted RBP12.16□□□□□ -0.46
USP4-214ENST00000491791 MCM7P33993 719 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 TXLNAP40222 546 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 NAPAP54920 295 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 EIF6P56537 245 aaKnown RBP12.16□□□□□ -0.46
USP4-214ENST00000491791 UBASH3AP57075 661 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 FMR1Q06787 632 aaKnown RBP eCLIP12.16□□□□□ -0.46
USP4-214ENST00000491791 TBX2Q13207 712 aaPredicted RBP12.16□□□□□ -0.46
USP4-214ENST00000491791 KCNB1Q14721 858 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 SLC4A8Q2Y0W8 1093 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 DCAF8Q5TAQ9 597 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 GPC2Q8N158 579 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 CCDC112Q8NEF3 446 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 MYRIPQ8NFW9 859 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 DHX58Q96C10 678 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 PSMD1Q99460 953 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 KANSL2Q9H9L4 492 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 FANCLQ9NW38 375 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 FAM198AQ9UFP1 575 aa12.16□□□□□ -0.46
USP4-214ENST00000491791 ZNF541Q9H0D2 1346 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 DYNC1I1O14576 645 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 GOLGA8HP0CJ92 632 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 SKILP12757 684 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 CLK2P49760 499 aaKnown RBP12.15□□□□□ -0.46
USP4-214ENST00000491791 PICALMQ13492 652 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 COBLL1Q53SF7 1204 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 CDKAL1Q5VV42 579 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 MCTP2Q6DN12 878 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 PPP4R3AQ6IN85 833 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms