RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 PARD3Q8TEW0 1356 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 ARHGAP42A6NI28 874 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 CALUO43852 315 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 FMNL1O95466 1100 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 EPHB4P54760 987 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 TBCCQ15814 346 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 NYAP1Q6ZVC0 841 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 WWC3Q9ULE0 1092 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 GINS2Q9Y248 185 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 AMOTL2Q9Y2J4 779 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 TIAM1Q13009 1591 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 IGBP1P78318 339 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 ARHGAP4P98171 946 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 RCN1Q15293 331 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 TRIM50Q86XT4 487 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 LRGUKQ96M69 825 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 PICK1Q9NRD5 415 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 DLGAP2Q9P1A6 1054 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 ZNF232Q9UNY5 417 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 WDR37Q9Y2I8 494 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 ORC6Q9Y5N6 252 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 SLC4A7Q9Y6M7 1214 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 WIZO95785 1651 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 FSBPO95073 299 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 CTNNA1P35221 906 aaKnown RBP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 PPP1R2P41236 205 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 TBC1D8BQ0IIM8 1120 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 CYLC2Q14093 348 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 SH3GL1Q99961 368 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 ANO3Q9BYT9 981 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 A1CFQ9NQ94 594 aaKnown RBP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 PKD2L1Q9P0L9 805 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 SCHIP1Q9P0W5 487 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 KLHL14Q9P2G3 628 aa7.92□□□□□ -1.14
SYNE1-228ENST00000490135 CORO1CQ9ULV4 474 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-228ENST00000490135 IL16Q14005 1332 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 CCDC189A1A4V9 331 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 ATP5J2-PTCD1G3V325 749 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 APOEP02649 317 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 KCNA3P22001 575 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 SERPINB4P48594 390 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 IRAK1P51617 712 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 VIPAS39Q9H9C1 493 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 SUCLA2Q9P2R7 463 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-228ENST00000490135 SFMBT1Q9UHJ3 866 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 USTQ9Y2C2 406 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 P4HA1P13674 534 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 GNL1P36915 607 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-228ENST00000490135 GOLGA8FQ08AF8 430 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 GOLGA8DPQ0D2H9 430 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 ASIC2Q16515 512 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 ZNF277Q9NRM2 450 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-228ENST00000490135 CHMP2AO43633 222 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 PFKFB2O60825 505 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 KRT38O76015 456 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 PRPF6O94906 941 aaKnown RBP7.91□□□□□ -1.14
SYNE1-228ENST00000490135 BAG2O95816 211 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 GFAPP14136 432 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 DNM2P50570 870 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 ITKQ08881 620 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 CBX3Q13185 183 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 ALDH1L2Q3SY69 923 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 BSPRYQ5W0U4 402 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 POTEEQ6S8J3 1075 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 C11orf57Q6ZUT1 292 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-228ENST00000490135 SV2BQ7L1I2 683 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 PALM2Q8IXS6 379 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 FLCNQ8NFG4 579 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 HELBQ8NG08 1087 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-228ENST00000490135 HDAC11Q96DB2 347 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 FTOQ9C0B1 505 aaKnown RBP eCLIP7.91□□□□□ -1.14
SYNE1-228ENST00000490135 PHACTR1Q9C0D0 580 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 PARVBQ9HBI1 364 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 DBF4Q9UBU7 674 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-228ENST00000490135 PRELID1Q9Y255 219 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 C2CD2Q9Y426 696 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 TMEM232C9JQI7 657 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 PDE5AO76074 875 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 XPAP23025 273 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-228ENST00000490135 CASP2P42575 452 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 ARPC4P59998 168 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 SARM1Q6SZW1 724 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 DTHD1Q6ZMT9 781 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 BRAPQ7Z569 592 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 SCYL1Q96KG9 808 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 SETDB2Q96T68 719 aa7.91□□□□□ -1.14
SYNE1-228ENST00000490135 IPO11Q9UI26 975 aaKnown RBP7.91□□□□□ -1.14
SYNE1-228ENST00000490135 NCOA3Q9Y6Q9 1424 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 IQCA1LA6NCM1 817 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 ALOX15P16050 662 aaPredicted RBP7.9□□□□□ -1.14
SYNE1-228ENST00000490135 SERPINB3P29508 390 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 SLC35F6Q8N357 371 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 COQ7Q99807 217 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 VPS37BQ9H9H4 285 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 TXLNGQ9NUQ3 528 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 GMNCA6NCL1 334 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 SUN1O94901 812 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 DDIT3P35638 169 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 FBXW4P57775 412 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms