RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 TTLL12Q14166 644 aaPredicted RBP24.82■■□□□ 1.56
SMC4-221ENST00000489573 STK38Q15208 465 aa24.82■■□□□ 1.56
SMC4-221ENST00000489573 MAP3K11Q16584 847 aa24.82■■□□□ 1.56
SMC4-221ENST00000489573 EARS2Q5JPH6 523 aaKnown RBP24.82■■□□□ 1.56
SMC4-221ENST00000489573 MAP1SQ66K74 1059 aaPredicted RBP24.82■■□□□ 1.56
SMC4-221ENST00000489573 LINC00301Q8NCQ3 95 aa24.82■■□□□ 1.56
SMC4-221ENST00000489573 BICD2Q8TD16 824 aa24.82■■□□□ 1.56
SMC4-221ENST00000489573 GPT2Q8TD30 523 aa24.82■■□□□ 1.56
SMC4-221ENST00000489573 FAM205CA6NFA0 338 aa24.81■■□□□ 1.56
SMC4-221ENST00000489573 VCAM1P19320 739 aa24.81■■□□□ 1.56
SMC4-221ENST00000489573 TOB1P50616 345 aaPredicted RBP24.81■■□□□ 1.56
SMC4-221ENST00000489573 ADCY7P51828 1080 aa24.81■■□□□ 1.56
SMC4-221ENST00000489573 ANKRD13AQ8IZ07 590 aa24.81■■□□□ 1.56
SMC4-221ENST00000489573 KIFC2Q96AC6 838 aa24.81■■□□□ 1.56
SMC4-221ENST00000489573 C12orf42Q96LP6 360 aa24.81■■□□□ 1.56
SMC4-221ENST00000489573 AMNQ9BXJ7 453 aa24.81■■□□□ 1.56
SMC4-221ENST00000489573 PCDHA6Q9UN73 950 aa24.81■■□□□ 1.56
SMC4-221ENST00000489573 PCDHA8Q9Y5H6 950 aa24.81■■□□□ 1.56
SMC4-221ENST00000489573 SNAP25P60880 206 aa24.8■■□□□ 1.56
SMC4-221ENST00000489573 DGKZQ13574 1117 aa24.8■■□□□ 1.56
SMC4-221ENST00000489573 SF3A1Q15459 793 aaKnown RBP24.8■■□□□ 1.56
SMC4-221ENST00000489573 PIK3AP1Q6ZUJ8 805 aa24.8■■□□□ 1.56
SMC4-221ENST00000489573 ARMC9Q7Z3E5 817 aa24.8■■□□□ 1.56
SMC4-221ENST00000489573 LDHDQ86WU2 507 aa24.8■■□□□ 1.56
SMC4-221ENST00000489573 FBXO11Q86XK2 927 aa24.8■■□□□ 1.56
SMC4-221ENST00000489573 KCNG4Q8TDN1 519 aa24.8■■□□□ 1.56
SMC4-221ENST00000489573 AFG3L2Q9Y4W6 797 aa24.8■■□□□ 1.56
SMC4-221ENST00000489573 PCDHA1Q9Y5I3 950 aa24.8■■□□□ 1.56
SMC4-221ENST00000489573 NOM1Q5C9Z4 860 aaKnown RBP24.8■■□□□ 1.56
SMC4-221ENST00000489573 RASGRP4Q8TDF6 673 aa24.8■■□□□ 1.56
SMC4-221ENST00000489573 RANBP17Q9H2T7 1088 aaKnown RBP24.8■■□□□ 1.56
SMC4-221ENST00000489573 FBXO28Q9NVF7 368 aa24.8■■□□□ 1.56
SMC4-221ENST00000489573 CCDC194A0A1B0GVG4 234 aa24.79■■□□□ 1.56
SMC4-221ENST00000489573 GOLGA6L4A6NEF3 574 aa24.79■■□□□ 1.56
SMC4-221ENST00000489573 TRAF1Q13077 416 aa24.79■■□□□ 1.56
SMC4-221ENST00000489573 SLC39A14Q15043 492 aa24.79■■□□□ 1.56
SMC4-221ENST00000489573 SLF1Q9BQI6 1058 aa24.79■■□□□ 1.56
SMC4-221ENST00000489573 TANGO6Q9C0B7 1094 aa24.79■■□□□ 1.56
SMC4-221ENST00000489573 RPAP3Q9H6T3 665 aaPredicted RBP24.79■■□□□ 1.56
SMC4-221ENST00000489573 RIC8AQ9NPQ8 531 aa24.79■■□□□ 1.56
SMC4-221ENST00000489573 SPTLC2O15270 562 aa24.78■■□□□ 1.56
SMC4-221ENST00000489573 TRAPPC10P48553 1259 aa24.78■■□□□ 1.56
SMC4-221ENST00000489573 HMGCS2P54868 508 aa24.78■■□□□ 1.56
SMC4-221ENST00000489573 MOB2Q70IA6 237 aa24.78■■□□□ 1.56
SMC4-221ENST00000489573 KRT25Q7Z3Z0 450 aa24.78■■□□□ 1.56
SMC4-221ENST00000489573 REXO1Q8N1G1 1221 aaKnown RBP24.78■■□□□ 1.56
SMC4-221ENST00000489573 RBM46Q8TBY0 533 aaKnown RBP24.78■■□□□ 1.56
SMC4-221ENST00000489573 PGBD1Q96JS3 809 aa24.78■■□□□ 1.56
SMC4-221ENST00000489573 GLT8D2Q9H1C3 349 aa24.78■■□□□ 1.56
SMC4-221ENST00000489573 ELP3Q9H9T3 547 aa24.78■■□□□ 1.56
SMC4-221ENST00000489573 ATP2B1P20020 1258 aa24.77■■□□□ 1.56
SMC4-221ENST00000489573 PTPAQ15257 358 aa24.77■■□□□ 1.56
SMC4-221ENST00000489573 PRPF38AQ8NAV1 312 aaKnown RBP24.77■■□□□ 1.56
SMC4-221ENST00000489573 CUL5Q93034 780 aa24.77■■□□□ 1.56
SMC4-221ENST00000489573 NMRK2Q9NPI5 230 aa24.77■■□□□ 1.56
SMC4-221ENST00000489573 TMOD4Q9NZQ9 345 aa24.77■■□□□ 1.56
SMC4-221ENST00000489573 TRAF5O00463 557 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 ME1P48163 572 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 MRPL12P52815 198 aaKnown RBP24.76■■□□□ 1.55
SMC4-221ENST00000489573 TPRNQ4KMQ1 711 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 SH3D19Q5HYK7 790 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 SAMD1Q6SPF0 538 aaPredicted RBP24.76■■□□□ 1.55
SMC4-221ENST00000489573 ERO1BQ86YB8 467 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 CLMNQ96JQ2 1002 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.76■■□□□ 1.55
SMC4-221ENST00000489573 CEP131Q9UPN4 1083 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 PCDHB6Q9Y5E3 794 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 PPATQ06203 517 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 USH1GQ495M9 461 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 TTC38Q5R3I4 469 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 JMYQ8N9B5 988 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 ZNF526Q8TF50 670 aaPredicted RBP24.76■■□□□ 1.55
SMC4-221ENST00000489573 PSTPIP2Q9H939 334 aa24.76■■□□□ 1.55
SMC4-221ENST00000489573 SPDYE5A6NIY4 337 aa24.75■■□□□ 1.55
SMC4-221ENST00000489573 PPP6R2O75170 966 aa24.75■■□□□ 1.55
SMC4-221ENST00000489573 FLOT1O75955 427 aa24.75■■□□□ 1.55
SMC4-221ENST00000489573 NONOQ15233 471 aaKnown RBP eCLIP24.75■■□□□ 1.552e-8■■■■■ 98.1
SMC4-221ENST00000489573 CCDC174Q6PII3 467 aa24.75■■□□□ 1.55
SMC4-221ENST00000489573 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.75■■□□□ 1.55
SMC4-221ENST00000489573 BIN2Q9UBW5 565 aaPredicted RBP24.75■■□□□ 1.55
SMC4-221ENST00000489573 PPP1R9AQ9ULJ8 1098 aa24.75■■□□□ 1.55
SMC4-221ENST00000489573 C1QTNF8P60827 252 aa24.74■■□□□ 1.55
SMC4-221ENST00000489573 CNKSR2Q8WXI2 1034 aa24.74■■□□□ 1.55
SMC4-221ENST00000489573 ZNF408Q9H9D4 720 aa24.74■■□□□ 1.55
SMC4-221ENST00000489573 PCDHA7Q9UN72 937 aa24.74■■□□□ 1.55
SMC4-221ENST00000489573 BMP15O95972 392 aa24.73■■□□□ 1.55
SMC4-221ENST00000489573 LDLRAD1Q5T700 205 aa24.73■■□□□ 1.55
SMC4-221ENST00000489573 JAKMIP3Q5VZ66 844 aa24.73■■□□□ 1.55
SMC4-221ENST00000489573 OTUD5Q96G74 571 aa24.73■■□□□ 1.55
SMC4-221ENST00000489573 TMEM260Q9NX78 707 aa24.73■■□□□ 1.55
SMC4-221ENST00000489573 CLK2P49760 499 aaKnown RBP24.72■■□□□ 1.55
SMC4-221ENST00000489573 INF2Q27J81 1249 aa24.72■■□□□ 1.55
SMC4-221ENST00000489573 CAVIN1Q6NZI2 390 aaKnown RBP24.72■■□□□ 1.55
SMC4-221ENST00000489573 MORC2Q9Y6X9 1032 aaPredicted RBP24.72■■□□□ 1.55
SMC4-221ENST00000489573 UNCXA6NJT0 531 aa24.71■■□□□ 1.55
SMC4-221ENST00000489573 WNT7AO00755 349 aa24.71■■□□□ 1.55
SMC4-221ENST00000489573 FDX1P10109 184 aa24.71■■□□□ 1.55
SMC4-221ENST00000489573 MARCKSP29966 332 aaPredicted RBP24.71■■□□□ 1.55
SMC4-221ENST00000489573 FMR1Q06787 632 aaKnown RBP eCLIP24.71■■□□□ 1.553e-7■□□□□ 10
SMC4-221ENST00000489573 UBE2SQ16763 222 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms