RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 RNF20Q5VTR2 975 aa16.72■□□□□ 0.27
BRCA1-218ENST00000489037 TTBK2Q6IQ55 1244 aa16.72■□□□□ 0.27
BRCA1-218ENST00000489037 SHISA4Q96DD7 197 aa16.72■□□□□ 0.27
BRCA1-218ENST00000489037 MAML3Q96JK9 1138 aa16.72■□□□□ 0.27
BRCA1-218ENST00000489037 LSG1Q9H089 658 aaKnown RBP16.72■□□□□ 0.27
BRCA1-218ENST00000489037 ACAD9Q9H845 621 aa16.72■□□□□ 0.27
BRCA1-218ENST00000489037 HOMER2Q9NSB8 354 aa16.72■□□□□ 0.27
BRCA1-218ENST00000489037 IFIT3O14879 490 aaKnown RBP16.71■□□□□ 0.27
BRCA1-218ENST00000489037 MSCO60682 206 aa16.71■□□□□ 0.27
BRCA1-218ENST00000489037 FARP2O94887 1054 aaPredicted RBP16.71■□□□□ 0.27
BRCA1-218ENST00000489037 SNHG28P0DPA3 235 aa16.71■□□□□ 0.27
BRCA1-218ENST00000489037 CCND3P30281 292 aaPredicted RBP16.71■□□□□ 0.27
BRCA1-218ENST00000489037 ASPRV1Q53RT3 343 aa16.71■□□□□ 0.27
BRCA1-218ENST00000489037 RASGRP2Q7LDG7 609 aa16.71■□□□□ 0.27
BRCA1-218ENST00000489037 ANKLE1Q8NAG6 615 aa16.71■□□□□ 0.27
BRCA1-218ENST00000489037 AGBL1Q96MI9 1066 aa16.71■□□□□ 0.27
BRCA1-218ENST00000489037 TRERF1Q96PN7 1200 aa16.71■□□□□ 0.27
BRCA1-218ENST00000489037 CRISPLD2Q9H0B8 497 aa16.71■□□□□ 0.27
BRCA1-218ENST00000489037 RNF146Q9NTX7 359 aa16.71■□□□□ 0.27
BRCA1-218ENST00000489037 CCPG1Q9ULG6 757 aa16.71■□□□□ 0.27
BRCA1-218ENST00000489037 SMCHD1A6NHR9 2005 aa16.7■□□□□ 0.26
BRCA1-218ENST00000489037 ICAM1P05362 532 aa16.7■□□□□ 0.26
BRCA1-218ENST00000489037 PARP1P09874 1014 aaKnown RBP16.7■□□□□ 0.26
BRCA1-218ENST00000489037 SNAP25P60880 206 aa16.7■□□□□ 0.26
BRCA1-218ENST00000489037 WTAPQ15007 396 aa16.7■□□□□ 0.26
BRCA1-218ENST00000489037 ZNF792Q3KQV3 632 aa16.7■□□□□ 0.26
BRCA1-218ENST00000489037 CYB5R4Q7L1T6 521 aa16.7■□□□□ 0.26
BRCA1-218ENST00000489037 HTATIP2Q9BUP3 242 aa16.7■□□□□ 0.26
BRCA1-218ENST00000489037 RANBP17Q9H2T7 1088 aaKnown RBP16.7■□□□□ 0.26
BRCA1-218ENST00000489037 DHX16O60231 1041 aaKnown RBP16.69■□□□□ 0.26
BRCA1-218ENST00000489037 GOLGA8HP0CJ92 632 aa16.69■□□□□ 0.26
BRCA1-218ENST00000489037 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.69■□□□□ 0.26
BRCA1-218ENST00000489037 MSL3Q8N5Y2 521 aaKnown RBP16.69■□□□□ 0.26
BRCA1-218ENST00000489037 TINF2Q9BSI4 451 aa16.69■□□□□ 0.26
BRCA1-218ENST00000489037 NRBP1Q9UHY1 535 aa16.69■□□□□ 0.26
BRCA1-218ENST00000489037 PFASO15067 1338 aa16.69■□□□□ 0.26
BRCA1-218ENST00000489037 ZNF536O15090 1300 aa16.69■□□□□ 0.26
BRCA1-218ENST00000489037 POTEB2H3BUK9 544 aa16.68■□□□□ 0.26
BRCA1-218ENST00000489037 SLC27A2O14975 620 aa16.68■□□□□ 0.26
BRCA1-218ENST00000489037 SEC23AQ15436 765 aa16.68■□□□□ 0.26
BRCA1-218ENST00000489037 TMEM67Q5HYA8 995 aa16.68■□□□□ 0.26
BRCA1-218ENST00000489037 CREB3L3Q68CJ9 461 aa16.68■□□□□ 0.26
BRCA1-218ENST00000489037 NECAB2Q7Z6G3 386 aa16.68■□□□□ 0.26
BRCA1-218ENST00000489037 UBA5Q9GZZ9 404 aa16.68■□□□□ 0.26
BRCA1-218ENST00000489037 DDX20Q9UHI6 824 aaKnown RBP16.68■□□□□ 0.26
BRCA1-218ENST00000489037 OGDHLQ9ULD0 1010 aa16.68■□□□□ 0.26
BRCA1-218ENST00000489037 CNPY2Q9Y2B0 182 aa16.68■□□□□ 0.26
BRCA1-218ENST00000489037 MCM3APO60318 1980 aa16.68■□□□□ 0.26
BRCA1-218ENST00000489037 DNAJC25-GNG10A0A024R161 153 aa16.67■□□□□ 0.26
BRCA1-218ENST00000489037 CYBAP13498 195 aa16.67■□□□□ 0.26
BRCA1-218ENST00000489037 MCM5P33992 734 aa16.67■□□□□ 0.26
BRCA1-218ENST00000489037 NECTIN1Q15223 517 aa16.67■□□□□ 0.26
BRCA1-218ENST00000489037 STOX1Q6ZVD7 989 aa16.67■□□□□ 0.26
BRCA1-218ENST00000489037 CHST3Q7LGC8 479 aa16.67■□□□□ 0.26
BRCA1-218ENST00000489037 CATIPQ7Z7H3 387 aa16.67■□□□□ 0.26
BRCA1-218ENST00000489037 ZNF467Q7Z7K2 595 aaPredicted RBP16.67■□□□□ 0.26
BRCA1-218ENST00000489037 DPF3Q92784 378 aa16.67■□□□□ 0.26
BRCA1-218ENST00000489037 MTA3Q9BTC8 594 aa16.67■□□□□ 0.26
BRCA1-218ENST00000489037 FRMPD3Q5JV73 1810 aa16.66■□□□□ 0.26
BRCA1-218ENST00000489037 SEPT4O43236 478 aa16.66■□□□□ 0.26
BRCA1-218ENST00000489037 IGHA2P01877 340 aa16.66■□□□□ 0.26
BRCA1-218ENST00000489037 PRAMEF19Q5SWL8 479 aa16.66■□□□□ 0.26
BRCA1-218ENST00000489037 NSMFQ6X4W1 530 aa16.66■□□□□ 0.26
BRCA1-218ENST00000489037 MB21D2Q8IYB1 491 aaPredicted RBP16.66■□□□□ 0.26
BRCA1-218ENST00000489037 TMTC2Q8N394 836 aa16.66■□□□□ 0.26
BRCA1-218ENST00000489037 PAWRQ96IZ0 340 aaKnown RBP16.66■□□□□ 0.26
BRCA1-218ENST00000489037 A1CFQ9NQ94 594 aaKnown RBP16.66■□□□□ 0.26
BRCA1-218ENST00000489037 TAF6LQ9Y6J9 622 aa16.66■□□□□ 0.26
BRCA1-218ENST00000489037 WDR19Q8NEZ3 1342 aa16.66■□□□□ 0.26
BRCA1-218ENST00000489037 SYNGAP1Q96PV0 1343 aa16.66■□□□□ 0.26
BRCA1-218ENST00000489037 PRC1O43663 620 aa16.65■□□□□ 0.26
BRCA1-218ENST00000489037 LHX8Q68G74 356 aa16.65■□□□□ 0.26
BRCA1-218ENST00000489037 NFXL1Q6ZNB6 911 aa16.65■□□□□ 0.26
BRCA1-218ENST00000489037 ADGRF4Q8IZF3 695 aa16.65■□□□□ 0.26
BRCA1-218ENST00000489037 TRPV1Q8NER1 839 aa16.65■□□□□ 0.26
BRCA1-218ENST00000489037 TMEM87BQ96K49 555 aa16.65■□□□□ 0.26
BRCA1-218ENST00000489037 VAT1LQ9HCJ6 419 aa16.65■□□□□ 0.26
BRCA1-218ENST00000489037 BAZ2BQ9UIF8 2168 aaKnown RBP16.65■□□□□ 0.26
BRCA1-218ENST00000489037 ASB14A6NK59 587 aa16.64■□□□□ 0.25
BRCA1-218ENST00000489037 KLRF2D3W0D1 207 aa16.64■□□□□ 0.25
BRCA1-218ENST00000489037 REC8O95072 547 aa16.64■□□□□ 0.25
BRCA1-218ENST00000489037 KRT32Q14532 448 aa16.64■□□□□ 0.25
BRCA1-218ENST00000489037 CDC37Q16543 378 aaPredicted RBP16.64■□□□□ 0.25
BRCA1-218ENST00000489037 MUM1L1Q5H9M0 696 aa16.64■□□□□ 0.25
BRCA1-218ENST00000489037 MAMDC4Q6UXC1 1216 aa16.64■□□□□ 0.25
BRCA1-218ENST00000489037 UBE2Q1Q7Z7E8 422 aa16.64■□□□□ 0.25
BRCA1-218ENST00000489037 ARRDC4Q8NCT1 418 aa16.64■□□□□ 0.25
BRCA1-218ENST00000489037 C11orf49Q9H6J7 331 aa16.64■□□□□ 0.25
BRCA1-218ENST00000489037 CYP39A1Q9NYL5 469 aa16.64■□□□□ 0.25
BRCA1-218ENST00000489037 PTPDC1A2A3K4 754 aa16.63■□□□□ 0.25
BRCA1-218ENST00000489037 CCDC69A6NI79 296 aa16.63■□□□□ 0.25
BRCA1-218ENST00000489037 RARBP10826 455 aa16.63■□□□□ 0.25
BRCA1-218ENST00000489037 ANTXR2P58335 489 aa16.63■□□□□ 0.25
BRCA1-218ENST00000489037 CNTN2Q02246 1040 aa16.63■□□□□ 0.25
BRCA1-218ENST00000489037 TRAF1Q13077 416 aa16.63■□□□□ 0.25
BRCA1-218ENST00000489037 GRM4Q14833 912 aa16.63■□□□□ 0.25
BRCA1-218ENST00000489037 USH1GQ495M9 461 aa16.63■□□□□ 0.25
BRCA1-218ENST00000489037 PRPF38BQ5VTL8 546 aaKnown RBP16.63■□□□□ 0.25
BRCA1-218ENST00000489037 FAM133AQ8N9E0 248 aa16.63■□□□□ 0.25
BRCA1-218ENST00000489037 IGDCC4Q8TDY8 1250 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms