RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 ZNF536O15090 1300 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 SDSP20132 328 aa14.53□□□□□ -0.08
SDC3-204ENST00000487984 HAND2P61296 217 aa14.53□□□□□ -0.08
SDC3-204ENST00000487984 SNX17Q15036 470 aa14.53□□□□□ -0.08
SDC3-204ENST00000487984 RCSD1Q6JBY9 416 aa14.53□□□□□ -0.08
SDC3-204ENST00000487984 ZNF467Q7Z7K2 595 aaPredicted RBP14.53□□□□□ -0.08
SDC3-204ENST00000487984 TDHQ8IZJ6 230 aa14.53□□□□□ -0.08
SDC3-204ENST00000487984 FERMT2Q96AC1 680 aa14.53□□□□□ -0.08
SDC3-204ENST00000487984 AGBL1Q96MI9 1066 aa14.53□□□□□ -0.08
SDC3-204ENST00000487984 ACAD9Q9H845 621 aa14.53□□□□□ -0.08
SDC3-204ENST00000487984 ZHX1Q9UKY1 873 aaPredicted RBP14.53□□□□□ -0.08
SDC3-204ENST00000487984 PHF24Q9UPV7 400 aa14.53□□□□□ -0.08
SDC3-204ENST00000487984 MTMR7Q9Y216 660 aa14.53□□□□□ -0.08
SDC3-204ENST00000487984 ZNFX1Q9P2E3 1918 aaKnown RBP14.53□□□□□ -0.08
SDC3-204ENST00000487984 SNAP25P60880 206 aa14.52□□□□□ -0.09
SDC3-204ENST00000487984 CCDC96Q2M329 555 aa14.52□□□□□ -0.09
SDC3-204ENST00000487984 TRIM60Q495X7 471 aa14.52□□□□□ -0.09
SDC3-204ENST00000487984 CCDC174Q6PII3 467 aa14.52□□□□□ -0.09
SDC3-204ENST00000487984 RNF180Q86T96 592 aa14.52□□□□□ -0.09
SDC3-204ENST00000487984 TBC1D10CQ8IV04 446 aa14.52□□□□□ -0.09
SDC3-204ENST00000487984 DCAF4Q8WV16 495 aa14.52□□□□□ -0.09
SDC3-204ENST00000487984 RNF146Q9NTX7 359 aa14.52□□□□□ -0.09
SDC3-204ENST00000487984 TCP11L1Q9NUJ3 509 aa14.52□□□□□ -0.09
SDC3-204ENST00000487984 FAM184BQ9ULE4 1060 aa14.52□□□□□ -0.09
SDC3-204ENST00000487984 PRR12Q9ULL5 1215 aa14.52□□□□□ -0.09
SDC3-204ENST00000487984 ADAMTS4O75173 837 aa14.51□□□□□ -0.09
SDC3-204ENST00000487984 TOP1P11387 765 aaKnown RBP14.51□□□□□ -0.09
SDC3-204ENST00000487984 MFAP1P55081 439 aaKnown RBP14.51□□□□□ -0.09
SDC3-204ENST00000487984 CNTN2Q02246 1040 aa14.51□□□□□ -0.09
SDC3-204ENST00000487984 TKFCQ3LXA3 575 aa14.51□□□□□ -0.09
SDC3-204ENST00000487984 LRIT3Q3SXY7 679 aa14.51□□□□□ -0.09
SDC3-204ENST00000487984 AKNAD1Q5T1N1 836 aa14.51□□□□□ -0.09
SDC3-204ENST00000487984 ARMCX2Q7L311 632 aa14.51□□□□□ -0.09
SDC3-204ENST00000487984 TMEM47Q9BQJ4 181 aa14.51□□□□□ -0.09
SDC3-204ENST00000487984 A1CFQ9NQ94 594 aaKnown RBP14.51□□□□□ -0.09
SDC3-204ENST00000487984 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.51□□□□□ -0.09
SDC3-204ENST00000487984 PRKAG2Q9UGJ0 569 aa14.51□□□□□ -0.09
SDC3-204ENST00000487984 SUPT16HQ9Y5B9 1047 aaKnown RBP14.51□□□□□ -0.09
SDC3-204ENST00000487984 PLXNA1Q9UIW2 1896 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 SYNRGQ9UMZ2 1314 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 A0A1W2PQ45 241 aaPredicted RBP14.5□□□□□ -0.09
SDC3-204ENST00000487984 A0A1W2PQY0 241 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 POTEB2H3BUK9 544 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 ALAS1P13196 640 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 ACVR2BQ13705 512 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 C1orf53Q5VUE5 145 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 TTBK2Q6IQ55 1244 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 CWC27Q6UX04 472 aaKnown RBP14.5□□□□□ -0.09
SDC3-204ENST00000487984 MFSD6Q6ZSS7 791 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 CCDC144CPQ8IYA2 1237 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 FAM133AQ8N9E0 248 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 TRERF1Q96PN7 1200 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 LBHD1Q9BQE6 289 aaPredicted RBP14.5□□□□□ -0.09
SDC3-204ENST00000487984 PRDM5Q9NQX1 630 aaPredicted RBP14.5□□□□□ -0.09
SDC3-204ENST00000487984 DIAPH3Q9NSV4 1193 aa14.5□□□□□ -0.09
SDC3-204ENST00000487984 NEDD4P46934 1319 aa14.49□□□□□ -0.09
SDC3-204ENST00000487984 FRMPD2Q68DX3 1309 aaPredicted RBP14.49□□□□□ -0.09
SDC3-204ENST00000487984 ADCY6O43306 1168 aa14.49□□□□□ -0.09
SDC3-204ENST00000487984 NEFLP07196 543 aa14.49□□□□□ -0.09
SDC3-204ENST00000487984 PCP11498 1178 aaKnown RBP14.49□□□□□ -0.09
SDC3-204ENST00000487984 SLC16A2P36021 539 aa14.49□□□□□ -0.09
SDC3-204ENST00000487984 MUM1L1Q5H9M0 696 aa14.49□□□□□ -0.09
SDC3-204ENST00000487984 BTNL9Q6UXG8 535 aa14.49□□□□□ -0.09
SDC3-204ENST00000487984 KLHDC9Q8NEP7 349 aa14.49□□□□□ -0.09
SDC3-204ENST00000487984 KATNBL1Q9H079 304 aa14.49□□□□□ -0.09
SDC3-204ENST00000487984 RANBP17Q9H2T7 1088 aaKnown RBP14.49□□□□□ -0.09
SDC3-204ENST00000487984 ABHD16BQ9H3Z7 469 aa14.49□□□□□ -0.09
SDC3-204ENST00000487984 RNF41Q9H4P4 317 aaPredicted RBP14.49□□□□□ -0.09
SDC3-204ENST00000487984 PDLIM7Q9NR12 457 aa14.49□□□□□ -0.09
SDC3-204ENST00000487984 CCPG1Q9ULG6 757 aa14.49□□□□□ -0.09
SDC3-204ENST00000487984 SMCHD1A6NHR9 2005 aa14.48□□□□□ -0.09
SDC3-204ENST00000487984 TRIM43BA6NCK2 446 aa14.48□□□□□ -0.09
SDC3-204ENST00000487984 MYADML2A6NDP7 307 aa14.48□□□□□ -0.09
SDC3-204ENST00000487984 SOWAHBA6NEL2 793 aa14.48□□□□□ -0.09
SDC3-204ENST00000487984 DUSP11O75319 330 aaKnown RBP14.48□□□□□ -0.09
SDC3-204ENST00000487984 ICAM1P05362 532 aa14.48□□□□□ -0.09
SDC3-204ENST00000487984 TLE2Q04725 743 aa14.48□□□□□ -0.09
SDC3-204ENST00000487984 CCDC144BQ3MJ40 725 aa14.48□□□□□ -0.09
SDC3-204ENST00000487984 SYDE2Q5VT97 1194 aa14.48□□□□□ -0.09
SDC3-204ENST00000487984 CCSAPQ6IQ19 270 aaPredicted RBP14.48□□□□□ -0.09
SDC3-204ENST00000487984 SH3RF1Q7Z6J0 888 aa14.48□□□□□ -0.09
SDC3-204ENST00000487984 TRIM43Q96BQ3 446 aaPredicted RBP14.48□□□□□ -0.09
SDC3-204ENST00000487984 TSEN34Q9BSV6 310 aaKnown RBP14.48□□□□□ -0.09
SDC3-204ENST00000487984 GPCPD1Q9NPB8 672 aa14.48□□□□□ -0.09
SDC3-204ENST00000487984 ASTN1O14525 1302 aa14.47□□□□□ -0.09
SDC3-204ENST00000487984 HIP1O00291 1037 aa14.47□□□□□ -0.09
SDC3-204ENST00000487984 ZNF213O14771 459 aa14.47□□□□□ -0.09
SDC3-204ENST00000487984 PDHBP11177 359 aa14.47□□□□□ -0.09
SDC3-204ENST00000487984 ACLYP53396 1101 aa14.47□□□□□ -0.09
SDC3-204ENST00000487984 IRX5P78411 483 aaPredicted RBP14.47□□□□□ -0.09
SDC3-204ENST00000487984 KCNA10Q16322 511 aa14.47□□□□□ -0.09
SDC3-204ENST00000487984 GPR153Q6NV75 609 aa14.47□□□□□ -0.09
SDC3-204ENST00000487984 ESR2Q92731 530 aa14.47□□□□□ -0.09
SDC3-204ENST00000487984 TTC14Q96N46 770 aa14.47□□□□□ -0.09
SDC3-204ENST00000487984 UPF3AQ9H1J1 476 aaKnown RBP14.47□□□□□ -0.09
SDC3-204ENST00000487984 CYP39A1Q9NYL5 469 aa14.47□□□□□ -0.09
SDC3-204ENST00000487984 DDX49Q9Y6V7 483 aaKnown RBP14.47□□□□□ -0.09
SDC3-204ENST00000487984 MOXD2PA6NHM9 499 aa14.46□□□□□ -0.09
SDC3-204ENST00000487984 ASB14A6NK59 587 aa14.46□□□□□ -0.09
SDC3-204ENST00000487984 PQBP1O60828 265 aaKnown RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms