RNA–Protein interactions for RNA: ENST00000487485.1

TOP3B-216, Transcript of DNA topoisomerase III beta, humanhuman

TSL 3

Gene TOP3B, Length 725 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-216ENST00000487485 POTEB2H3BUK9 544 aa12.48□□□□□ -0.41
TOP3B-216ENST00000487485 PDHBP11177 359 aa12.48□□□□□ -0.41
TOP3B-216ENST00000487485 COL6A1P12109 1028 aa12.48□□□□□ -0.41
TOP3B-216ENST00000487485 FGD1P98174 961 aa12.48□□□□□ -0.41
TOP3B-216ENST00000487485 MDM2Q00987 491 aaPredicted RBP12.48□□□□□ -0.41
TOP3B-216ENST00000487485 COG2Q14746 738 aa12.48□□□□□ -0.41
TOP3B-216ENST00000487485 LRRC26Q2I0M4 334 aa12.48□□□□□ -0.41
TOP3B-216ENST00000487485 KCTD1Q719H9 257 aa12.48□□□□□ -0.41
TOP3B-216ENST00000487485 RASGRP2Q7LDG7 609 aa12.48□□□□□ -0.41
TOP3B-216ENST00000487485 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.48□□□□□ -0.41
TOP3B-216ENST00000487485 DCAF4Q8WV16 495 aa12.48□□□□□ -0.41
TOP3B-216ENST00000487485 P2RX7Q99572 595 aaKnown RBP12.48□□□□□ -0.41
TOP3B-216ENST00000487485 UPF3BQ9BZI7 483 aaKnown RBP12.48□□□□□ -0.41
TOP3B-216ENST00000487485 TXNRD2Q9NNW7 524 aa12.48□□□□□ -0.41
TOP3B-216ENST00000487485 ISY1Q9ULR0 285 aaKnown RBP12.48□□□□□ -0.41
TOP3B-216ENST00000487485 COL11A1P12107 1806 aaPredicted RBP12.48□□□□□ -0.41
TOP3B-216ENST00000487485 TMEM232C9JQI7 657 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 FLOT1O75955 427 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 SNHG28P0DPA3 235 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 HERVK_113P62684 666 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 CACNB2Q08289 660 aaPredicted RBP12.47□□□□□ -0.41
TOP3B-216ENST00000487485 CCDC96Q2M329 555 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 Q3C1V9 767 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 LHX8Q68G74 356 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 SAMD1Q6SPF0 538 aaPredicted RBP12.47□□□□□ -0.41
TOP3B-216ENST00000487485 CATIPQ7Z7H3 387 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 SGMS1Q86VZ5 419 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 GUCD1Q96NT3 240 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 NUDT12Q9BQG2 462 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 PDRG1Q9NUG6 133 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 HOXC10Q9NYD6 342 aa12.47□□□□□ -0.41
TOP3B-216ENST00000487485 FRMPD2Q68DX3 1309 aaPredicted RBP12.46□□□□□ -0.41
TOP3B-216ENST00000487485 GOLGA8HP0CJ92 632 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 XRCC5P13010 732 aaKnown RBP12.46□□□□□ -0.41
TOP3B-216ENST00000487485 CCND3P30281 292 aaPredicted RBP12.46□□□□□ -0.41
TOP3B-216ENST00000487485 DSG3P32926 999 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 TROAPQ12815 778 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 CCL14Q16627 93 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 TTBK2Q6IQ55 1244 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 ZNF654Q8IZM8 581 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 FBXL16Q8N461 479 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 GPRC5AQ8NFJ5 357 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 CHURC1Q8WUH1 139 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 NUP133Q8WUM0 1156 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 BRF1Q92994 677 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 FAM161BQ96MY7 647 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 TBC1D32Q96NH3 1257 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 KIF2CQ99661 725 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 AGXT2Q9BYV1 514 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 GPCPD1Q9NPB8 672 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 FBXO28Q9NVF7 368 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 RBPJLQ9UBG7 517 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 FEM1BQ9UK73 627 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 SLC12A7Q9Y666 1083 aa12.46□□□□□ -0.41
TOP3B-216ENST00000487485 SPDYE16A6NNV3 312 aaPredicted RBP12.45□□□□□ -0.42
TOP3B-216ENST00000487485 PLA2G6O60733 806 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 DDAH1O94760 285 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 PARP1P09874 1014 aaKnown RBP12.45□□□□□ -0.42
TOP3B-216ENST00000487485 NEK4P51957 841 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 STAT2P52630 851 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 ZNF543Q08ER8 600 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 APOBRQ0VD83 1088 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 IKQ13123 557 aaPredicted RBP12.45□□□□□ -0.42
TOP3B-216ENST00000487485 TOB2Q14106 344 aaPredicted RBP12.45□□□□□ -0.42
TOP3B-216ENST00000487485 ASPRV1Q53RT3 343 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 GPATCH4Q5T3I0 446 aaKnown RBP12.45□□□□□ -0.42
TOP3B-216ENST00000487485 FAM109BQ6ICB4 259 aaPredicted RBP12.45□□□□□ -0.42
TOP3B-216ENST00000487485 POTEEQ6S8J3 1075 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 SYNE3Q6ZMZ3 975 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 FAM160B2Q86V87 743 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 PRPF38AQ8NAV1 312 aaKnown RBP12.45□□□□□ -0.42
TOP3B-216ENST00000487485 USP6NLQ92738 828 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 SLF1Q9BQI6 1058 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 MYL10Q9BUA6 226 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 ALDH8A1Q9H2A2 487 aaPredicted RBP12.45□□□□□ -0.42
TOP3B-216ENST00000487485 BRPF3Q9ULD4 1205 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 PPP1R9AQ9ULJ8 1098 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 MYO9BQ13459 2157 aa12.45□□□□□ -0.42
TOP3B-216ENST00000487485 EYSQ5T1H1 3165 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 KLF18A0A0U1RQI7 1052 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 CALM1P0DP23 149 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 CALM2P0DP24 149 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 CALM3P0DP25 149 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 RXRAP19793 462 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 SLC16A2P36021 539 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 GRM4Q14833 912 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 APOA5Q6Q788 366 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 BTNL9Q6UXG8 535 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 LBX2Q6XYB7 198 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 RAB11FIP4Q86YS3 637 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 STAG2Q8N3U4 1231 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 GTF3C2Q8WUA4 911 aaPredicted RBP12.44□□□□□ -0.42
TOP3B-216ENST00000487485 SOCS4Q8WXH5 440 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 KIFC2Q96AC6 838 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 ATG4CQ96DT6 458 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 MAP3K14Q99558 947 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 UBA5Q9GZZ9 404 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 PORCNQ9H237 461 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 MAD2L2Q9UI95 211 aa12.44□□□□□ -0.42
TOP3B-216ENST00000487485 NAP1L2Q9ULW6 460 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms