RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 LRRFIP1Q32MZ4 808 aaKnown RBP9.9□□□□□ -0.82
USP54-211ENST00000474929 CCDC102BQ68D86 513 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 EP400NLQ6ZTU2 488 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 CERS3Q8IU89 383 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 CDCA7LQ96GN5 454 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 RAD9AQ99638 391 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 FTOQ9C0B1 505 aaKnown RBP eCLIP9.9□□□□□ -0.82
USP54-211ENST00000474929 NSUN3Q9H649 340 aaKnown RBP9.9□□□□□ -0.82
USP54-211ENST00000474929 SH2D4AQ9H788 454 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 CDK5RAP2Q96SN8 1893 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 F6X3S4 739 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 STXBP3O00186 592 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 FLOT1O75955 427 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 PARNO95453 639 aaKnown RBP9.89□□□□□ -0.83
USP54-211ENST00000474929 DSG3P32926 999 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 ACVR2BQ13705 512 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 ABCB5Q2M3G0 1257 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 TATDN1Q6P1N9 297 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 RIOX2Q8IUF8 465 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 CCDC155Q8N6L0 562 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 RETREG2Q8NC44 543 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 BANK1Q8NDB2 785 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 NSUN4Q96CB9 384 aaKnown RBP9.89□□□□□ -0.83
USP54-211ENST00000474929 KAZALD1Q96I82 304 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 EHD4Q9H223 541 aa9.89□□□□□ -0.83
USP54-211ENST00000474929 GJB5O95377 273 aa9.88□□□□□ -0.83
USP54-211ENST00000474929 PGK2P07205 417 aa9.88□□□□□ -0.83
USP54-211ENST00000474929 SDHBP21912 280 aa9.88□□□□□ -0.83
USP54-211ENST00000474929 VCPP55072 806 aaKnown RBP9.88□□□□□ -0.83
USP54-211ENST00000474929 BFSP2Q13515 415 aa9.88□□□□□ -0.83
USP54-211ENST00000474929 COL9A2Q14055 689 aaPredicted RBP9.88□□□□□ -0.83
USP54-211ENST00000474929 MVPQ14764 893 aaKnown RBP9.88□□□□□ -0.83
USP54-211ENST00000474929 CERKLQ49MI3 558 aaPredicted RBP9.88□□□□□ -0.83
USP54-211ENST00000474929 CXCL17Q6UXB2 119 aa9.88□□□□□ -0.83
USP54-211ENST00000474929 ANKRD44Q8N8A2 993 aa9.88□□□□□ -0.83
USP54-211ENST00000474929 RMDN1Q96DB5 314 aa9.88□□□□□ -0.83
USP54-211ENST00000474929 ALDH8A1Q9H2A2 487 aaPredicted RBP9.88□□□□□ -0.83
USP54-211ENST00000474929 SEMA4AQ9H3S1 761 aa9.88□□□□□ -0.83
USP54-211ENST00000474929 CLDND1Q9NY35 253 aa9.88□□□□□ -0.83
USP54-211ENST00000474929 SERPINB13Q9UIV8 391 aa9.88□□□□□ -0.83
USP54-211ENST00000474929 MTUS1Q9ULD2 1270 aa9.88□□□□□ -0.83
USP54-211ENST00000474929 LINC01553A4QN01 128 aa9.87□□□□□ -0.83
USP54-211ENST00000474929 MBTPS2O43462 519 aa9.87□□□□□ -0.83
USP54-211ENST00000474929 NBPF7P0C2Y1 421 aaPredicted RBP9.87□□□□□ -0.83
USP54-211ENST00000474929 WDR5P61964 334 aaKnown RBP9.87□□□□□ -0.83
USP54-211ENST00000474929 CCDC144BQ3MJ40 725 aa9.87□□□□□ -0.83
USP54-211ENST00000474929 MAPKAPK5Q8IW41 473 aa9.87□□□□□ -0.83
USP54-211ENST00000474929 KLHDC4Q8TBB5 520 aa9.87□□□□□ -0.83
USP54-211ENST00000474929 SH3RF3Q8TEJ3 882 aaPredicted RBP9.87□□□□□ -0.83
USP54-211ENST00000474929 TSR2Q969E8 191 aaKnown RBP9.87□□□□□ -0.83
USP54-211ENST00000474929 VWCEQ96DN2 955 aa9.87□□□□□ -0.83
USP54-211ENST00000474929 DDX11Q96FC9 970 aa9.87□□□□□ -0.83
USP54-211ENST00000474929 AP5M1Q9H0R1 490 aa9.87□□□□□ -0.83
USP54-211ENST00000474929 TRPV6Q9H1D0 765 aa9.87□□□□□ -0.83
USP54-211ENST00000474929 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.87□□□□□ -0.83
USP54-211ENST00000474929 RAI14Q9P0K7 980 aa9.87□□□□□ -0.83
USP54-211ENST00000474929 ZNF292O60281 2723 aa9.86□□□□□ -0.83
USP54-211ENST00000474929 ANKRD11Q6UB99 2663 aaPredicted RBP9.86□□□□□ -0.83
USP54-211ENST00000474929 LCHNA4D1U4 455 aa9.86□□□□□ -0.83
USP54-211ENST00000474929 WDR46O15213 610 aaKnown RBP9.86□□□□□ -0.83
USP54-211ENST00000474929 SNAI1O95863 264 aaPredicted RBP9.86□□□□□ -0.83
USP54-211ENST00000474929 IL15P40933 162 aaPredicted RBP9.86□□□□□ -0.83
USP54-211ENST00000474929 FSCN1Q16658 493 aaKnown RBP9.86□□□□□ -0.83
USP54-211ENST00000474929 SHROOM1Q2M3G4 852 aaPredicted RBP9.86□□□□□ -0.83
USP54-211ENST00000474929 TCEAL5Q5H9L2 206 aa9.86□□□□□ -0.83
USP54-211ENST00000474929 SLC4A10Q6U841 1118 aa9.86□□□□□ -0.83
USP54-211ENST00000474929 RPAINQ86UA6 219 aa9.86□□□□□ -0.83
USP54-211ENST00000474929 TLK2Q86UE8 772 aa9.86□□□□□ -0.83
USP54-211ENST00000474929 ACER1Q8TDN7 264 aa9.86□□□□□ -0.83
USP54-211ENST00000474929 TGFBRAP1Q8WUH2 860 aa9.86□□□□□ -0.83
USP54-211ENST00000474929 ATG4CQ96DT6 458 aa9.86□□□□□ -0.83
USP54-211ENST00000474929 PALD1Q9ULE6 856 aa9.86□□□□□ -0.83
USP54-211ENST00000474929 INSL6Q9Y581 213 aa9.86□□□□□ -0.83
USP54-211ENST00000474929 IQCF3P0C7M6 154 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 STAT3P40763 770 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 PPP4CP60510 307 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 CBX2Q14781 532 aaPredicted RBP9.85□□□□□ -0.83
USP54-211ENST00000474929 TMEM132BQ14DG7 1078 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 NOL8Q76FK4 1167 aaKnown RBP9.85□□□□□ -0.83
USP54-211ENST00000474929 TTC6Q86TZ1 520 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 ZNF384Q8TF68 577 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 PPP2R3CQ969Q6 453 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 ASIC4Q96FT7 647 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 POLR3EQ9NVU0 708 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 CD207Q9UJ71 328 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 ADAMTS8Q9UP79 889 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 Q9Y3F1 56 aa9.85□□□□□ -0.83
USP54-211ENST00000474929 MAP1BP46821 2468 aaKnown RBP9.84□□□□□ -0.83
USP54-211ENST00000474929 IL16Q14005 1332 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 PARP14Q460N5 1801 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 DNAH14Q0VDD8 3507 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 SCN5AQ14524 2016 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 CFAP47Q6ZTR5 3102 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 ABHD14A-ACY1A0A1B0GW23 586 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 APAF1O14727 1248 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 CTAGE5O15320 804 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 MCAMP43121 646 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 TNFAIP2Q03169 654 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 CCDC27Q2M243 656 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 NAA16Q6N069 864 aaPredicted RBP9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms