RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 DSG3P32926 999 aa11.9□□□□□ -0.5
COL12A1-206ENST00000474564 KRT2P35908 639 aa11.9□□□□□ -0.5
COL12A1-206ENST00000474564 APLP1P51693 650 aa11.9□□□□□ -0.5
COL12A1-206ENST00000474564 FUT2Q10981 343 aa11.9□□□□□ -0.5
COL12A1-206ENST00000474564 ST3GAL1Q11201 340 aa11.9□□□□□ -0.5
COL12A1-206ENST00000474564 MCF2L2Q86YR7 1114 aa11.9□□□□□ -0.5
COL12A1-206ENST00000474564 CCAR1Q8IX12 1150 aaKnown RBP11.9□□□□□ -0.5
COL12A1-206ENST00000474564 SMCR8Q8TEV9 937 aaPredicted RBP11.9□□□□□ -0.5
COL12A1-206ENST00000474564 BARHL2Q9NY43 387 aa11.9□□□□□ -0.5
COL12A1-206ENST00000474564 PCDHA1Q9Y5I3 950 aa11.9□□□□□ -0.5
COL12A1-206ENST00000474564 CYTH3O43739 400 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 COPB2P35606 906 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 FOSBP53539 338 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 OAZ1P54368 228 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 MKRN3Q13064 507 aaKnown RBP11.89□□□□□ -0.51
COL12A1-206ENST00000474564 CSPP1Q1MSJ5 1256 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 QRICH1Q2TAL8 776 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 DEFB115Q30KQ5 88 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 KRT40Q6A162 431 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 BRAPQ7Z569 592 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 ANKRD23Q86SG2 305 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 CNKSR2Q8WXI2 1034 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 CPVLQ9H3G5 476 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 EHMT1Q9H9B1 1298 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 ZCCHC17Q9NP64 241 aaKnown RBP11.89□□□□□ -0.51
COL12A1-206ENST00000474564 CREBZFQ9NS37 354 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 CCPG1Q9ULG6 757 aa11.89□□□□□ -0.51
COL12A1-206ENST00000474564 NOL7Q9UMY1 257 aaKnown RBP11.89□□□□□ -0.51
COL12A1-206ENST00000474564 ABCB11O95342 1321 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 GOLGB1Q14789 3259 aaKnown RBP11.88□□□□□ -0.51
COL12A1-206ENST00000474564 hCG_1642624A0A1W2PR95 340 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 SMCO2A6NFE2 343 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 MMP1P03956 469 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 ICAM1P05362 532 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 GCLCP48506 637 aaPredicted RBP11.88□□□□□ -0.51
COL12A1-206ENST00000474564 ADCY7P51828 1080 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 CCNA1P78396 465 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 GUCY1B3Q02153 619 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 NOGQ13253 232 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 PLS1Q14651 629 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 TKFCQ3LXA3 575 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 KIAA1755Q5JYT7 1200 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 CCDC174Q6PII3 467 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 CPXCR1Q8N123 301 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 SAMD3Q8N6K7 520 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 MTMR8Q96EF0 704 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 ZNF396Q96N95 335 aaPredicted RBP11.88□□□□□ -0.51
COL12A1-206ENST00000474564 PARK7Q99497 189 aaKnown RBP11.88□□□□□ -0.51
COL12A1-206ENST00000474564 MAF1Q9H063 256 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 RANBP17Q9H2T7 1088 aaKnown RBP11.88□□□□□ -0.51
COL12A1-206ENST00000474564 FOXP1Q9H334 677 aaPredicted RBP11.88□□□□□ -0.51
COL12A1-206ENST00000474564 PSTPIP2Q9H939 334 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 VPS54Q9P1Q0 977 aa11.88□□□□□ -0.51
COL12A1-206ENST00000474564 CCDC194A0A1B0GVG4 234 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 ESYT2A0FGR8 921 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 PDHXO00330 501 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 VWA5AO00534 786 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 ALDH1A1P00352 501 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 SLC10A3P09131 477 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 GRM1Q13255 1194 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 PKN1Q16512 942 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 USH1GQ495M9 461 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 WWC2Q6AWC2 1192 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 ATL3Q6DD88 541 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 RASAL3Q86YV0 1011 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 BLIDQ8IZY5 108 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 GPKOWQ92917 476 aaPredicted RBP eCLIP11.87□□□□□ -0.51
COL12A1-206ENST00000474564 TEX13BQ9BXU2 312 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 ASCC2Q9H1I8 757 aaPredicted RBP11.87□□□□□ -0.51
COL12A1-206ENST00000474564 SLC38A10Q9HBR0 1119 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 FBXO28Q9NVF7 368 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 MAP3K20Q9NYL2 800 aaKnown RBP11.87□□□□□ -0.51
COL12A1-206ENST00000474564 FBXO40Q9UH90 709 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 CFAP45Q9UL16 551 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 PCDHA4Q9UN74 947 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 TRPM7Q96QT4 1865 aa11.87□□□□□ -0.51
COL12A1-206ENST00000474564 SPDYE3A6NKU9 549 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 STXBP3O00186 592 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 BRD1O95696 1058 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 SLC25A27O95847 323 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 F13A1P00488 732 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 FOSP01100 380 aaPredicted RBP11.86□□□□□ -0.51
COL12A1-206ENST00000474564 ALAS1P13196 640 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 STAT3P40763 770 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 TREML2Q5T2D2 321 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 FOXD4L5Q5VV16 416 aaPredicted RBP11.86□□□□□ -0.51
COL12A1-206ENST00000474564 LBX2Q6XYB7 198 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 RASGRP2Q7LDG7 609 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 DIS3L2Q8IYB7 885 aaKnown RBP11.86□□□□□ -0.51
COL12A1-206ENST00000474564 REXO1Q8N1G1 1221 aaKnown RBP11.86□□□□□ -0.51
COL12A1-206ENST00000474564 FOXD4L4Q8WXT5 416 aaPredicted RBP11.86□□□□□ -0.51
COL12A1-206ENST00000474564 COA7Q96BR5 231 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 ATG4CQ96DT6 458 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 MS4A4AQ96JQ5 239 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 PHF20Q9BVI0 1012 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 ZMYND12Q9H0C1 365 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 RIC8AQ9NPQ8 531 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 KCNJ14Q9UNX9 436 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 MTMR6Q9Y217 621 aa11.86□□□□□ -0.51
COL12A1-206ENST00000474564 RABGAP1Q9Y3P9 1069 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms