RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SYNGAP1Q96PV0 1343 aa21.94■■□□□ 1.1
COL7A1-209ENST00000474432 LCTP09848 1927 aa21.94■■□□□ 1.1
COL7A1-209ENST00000474432 SOX1O00570 391 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-209ENST00000474432 TOP1P11387 765 aaKnown RBP21.93■■□□□ 1.1
COL7A1-209ENST00000474432 IRX6P78412 446 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-209ENST00000474432 SNX17Q15036 470 aa21.93■■□□□ 1.1
COL7A1-209ENST00000474432 BTNL9Q6UXG8 535 aa21.93■■□□□ 1.1
COL7A1-209ENST00000474432 SLC39A5Q6ZMH5 540 aa21.93■■□□□ 1.1
COL7A1-209ENST00000474432 XPNPEP3Q9NQH7 507 aa21.93■■□□□ 1.1
COL7A1-209ENST00000474432 TOMM22Q9NS69 142 aa21.93■■□□□ 1.1
COL7A1-209ENST00000474432 HOMER2Q9NSB8 354 aa21.93■■□□□ 1.1
COL7A1-209ENST00000474432 NEDD4P46934 1319 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 PGK1P00558 417 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 GSPT1P15170 499 aaKnown RBP21.92■■□□□ 1.1
COL7A1-209ENST00000474432 ADCYAP1R1P41586 468 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 RTP1P59025 263 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 CNTN2Q02246 1040 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 ANKRD35Q8N283 1001 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 FAM133AQ8N9E0 248 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 DCAF4Q8WV16 495 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 KATNBL1Q9H079 304 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 A1CFQ9NQ94 594 aaKnown RBP21.92■■□□□ 1.1
COL7A1-209ENST00000474432 RNF146Q9NTX7 359 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 ISY1Q9ULR0 285 aaKnown RBP21.92■■□□□ 1.1
COL7A1-209ENST00000474432 PHF24Q9UPV7 400 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 MTMR7Q9Y216 660 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 LTBP2Q14767 1821 aa21.92■■□□□ 1.1
COL7A1-209ENST00000474432 ASTN1O14525 1302 aa21.91■■□□□ 1.1
COL7A1-209ENST00000474432 KBTBD13C9JR72 458 aa21.91■■□□□ 1.1
COL7A1-209ENST00000474432 ADCY6O43306 1168 aa21.91■■□□□ 1.1
COL7A1-209ENST00000474432 ADAMTS4O75173 837 aa21.91■■□□□ 1.1
COL7A1-209ENST00000474432 RARBP10826 455 aa21.91■■□□□ 1.1
COL7A1-209ENST00000474432 PCP11498 1178 aaKnown RBP21.91■■□□□ 1.1
COL7A1-209ENST00000474432 AKR1A1P14550 325 aa21.91■■□□□ 1.1
COL7A1-209ENST00000474432 MFAP1P55081 439 aaKnown RBP21.91■■□□□ 1.1
COL7A1-209ENST00000474432 IKQ13123 557 aaPredicted RBP21.91■■□□□ 1.1
COL7A1-209ENST00000474432 MFSD6Q6ZSS7 791 aa21.91■■□□□ 1.1
COL7A1-209ENST00000474432 ACAD9Q9H845 621 aa21.91■■□□□ 1.1
COL7A1-209ENST00000474432 DIAPH3Q9NSV4 1193 aa21.91■■□□□ 1.1
COL7A1-209ENST00000474432 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.91■■□□□ 1.1
COL7A1-209ENST00000474432 CNPY2Q9Y2B0 182 aa21.91■■□□□ 1.1
COL7A1-209ENST00000474432 SOWAHBA6NEL2 793 aa21.9■■□□□ 1.1
COL7A1-209ENST00000474432 SLC16A2P36021 539 aa21.9■■□□□ 1.1
COL7A1-209ENST00000474432 TKFCQ3LXA3 575 aa21.9■■□□□ 1.1
COL7A1-209ENST00000474432 MUM1L1Q5H9M0 696 aa21.9■■□□□ 1.1
COL7A1-209ENST00000474432 CCDC174Q6PII3 467 aa21.9■■□□□ 1.1
COL7A1-209ENST00000474432 FERMT2Q96AC1 680 aa21.9■■□□□ 1.1
COL7A1-209ENST00000474432 TTC14Q96N46 770 aa21.9■■□□□ 1.1
COL7A1-209ENST00000474432 TRERF1Q96PN7 1200 aa21.9■■□□□ 1.1
COL7A1-209ENST00000474432 RANBP17Q9H2T7 1088 aaKnown RBP21.9■■□□□ 1.1
COL7A1-209ENST00000474432 MYCNP04198 464 aaPredicted RBP21.89■■□□□ 1.09
COL7A1-209ENST00000474432 SNHG28P0DPA3 235 aa21.89■■□□□ 1.09
COL7A1-209ENST00000474432 PDHBP11177 359 aa21.89■■□□□ 1.09
COL7A1-209ENST00000474432 IRX5P78411 483 aaPredicted RBP21.89■■□□□ 1.09
COL7A1-209ENST00000474432 ACVR2BQ13705 512 aa21.89■■□□□ 1.09
COL7A1-209ENST00000474432 CCDC96Q2M329 555 aa21.89■■□□□ 1.09
COL7A1-209ENST00000474432 DSCC1Q9BVC3 393 aa21.89■■□□□ 1.09
COL7A1-209ENST00000474432 LRRC37A2A6NM11 1700 aa21.89■■□□□ 1.09
COL7A1-209ENST00000474432 FRMPD2Q68DX3 1309 aaPredicted RBP21.88■■□□□ 1.09
COL7A1-209ENST00000474432 SYNRGQ9UMZ2 1314 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 HIP1O00291 1037 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 ZNF213O14771 459 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 ALAS1P13196 640 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 TRIM60Q495X7 471 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 TTC22Q5TAA0 569 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 C1orf53Q5VUE5 145 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 CCSAPQ6IQ19 270 aaPredicted RBP21.88■■□□□ 1.09
COL7A1-209ENST00000474432 ARMCX2Q7L311 632 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 CCDC144CPQ8IYA2 1237 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 KLHDC9Q8NEP7 349 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 LRCH3Q96II8 777 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 ZKSCAN3Q9BRR0 538 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 RNF41Q9H4P4 317 aaPredicted RBP21.88■■□□□ 1.09
COL7A1-209ENST00000474432 FAM184BQ9ULE4 1060 aa21.88■■□□□ 1.09
COL7A1-209ENST00000474432 MYADML2A6NDP7 307 aa21.87■■□□□ 1.09
COL7A1-209ENST00000474432 POTEB2H3BUK9 544 aa21.87■■□□□ 1.09
COL7A1-209ENST00000474432 ICAM1P05362 532 aa21.87■■□□□ 1.09
COL7A1-209ENST00000474432 MDM2Q00987 491 aaPredicted RBP21.87■■□□□ 1.09
COL7A1-209ENST00000474432 SYDE2Q5VT97 1194 aa21.87■■□□□ 1.09
COL7A1-209ENST00000474432 ABHD16BQ9H3Z7 469 aa21.87■■□□□ 1.09
COL7A1-209ENST00000474432 GPCPD1Q9NPB8 672 aa21.87■■□□□ 1.09
COL7A1-209ENST00000474432 CYP39A1Q9NYL5 469 aa21.87■■□□□ 1.09
COL7A1-209ENST00000474432 ZHX1Q9UKY1 873 aaPredicted RBP21.87■■□□□ 1.09
COL7A1-209ENST00000474432 ATP11BQ9Y2G3 1177 aa21.87■■□□□ 1.09
COL7A1-209ENST00000474432 DDX49Q9Y6V7 483 aaKnown RBP21.87■■□□□ 1.09
COL7A1-209ENST00000474432 ZNF543Q08ER8 600 aa21.86■■□□□ 1.09
COL7A1-209ENST00000474432 CCDC144BQ3MJ40 725 aa21.86■■□□□ 1.09
COL7A1-209ENST00000474432 RNF180Q86T96 592 aa21.86■■□□□ 1.09
COL7A1-209ENST00000474432 ANKS1AQ92625 1134 aa21.86■■□□□ 1.09
COL7A1-209ENST00000474432 ESR2Q92731 530 aa21.86■■□□□ 1.09
COL7A1-209ENST00000474432 CCPG1Q9ULG6 757 aa21.86■■□□□ 1.09
COL7A1-209ENST00000474432 CTAGE5O15320 804 aa21.85■■□□□ 1.09
COL7A1-209ENST00000474432 KDM4AO75164 1064 aa21.85■■□□□ 1.09
COL7A1-209ENST00000474432 DUSP11O75319 330 aaKnown RBP21.85■■□□□ 1.09
COL7A1-209ENST00000474432 DGKHQ86XP1 1220 aa21.85■■□□□ 1.09
COL7A1-209ENST00000474432 TDHQ8IZJ6 230 aa21.85■■□□□ 1.09
COL7A1-209ENST00000474432 PURBQ96QR8 312 aaKnown RBP21.85■■□□□ 1.09
COL7A1-209ENST00000474432 UBE2OQ9C0C9 1292 aaKnown RBP21.85■■□□□ 1.09
COL7A1-209ENST00000474432 A0A1W2PQ45 241 aaPredicted RBP21.84■■□□□ 1.09
COL7A1-209ENST00000474432 A0A1W2PQY0 241 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms