RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PLA2G6O60733 806 aa22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 PGK1P00558 417 aa22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 FDX1P10109 184 aa22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 HSPD1P10809 573 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 NUCB1Q02818 461 aa22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 KCTD1Q719H9 257 aa22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 ZNF467Q7Z7K2 595 aaPredicted RBP22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 FAM160B2Q86V87 743 aa22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 PLEKHM2Q8IWE5 1019 aa22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 STAG1Q8WVM7 1258 aa22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 FERMT2Q96AC1 680 aa22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 HOMER2Q9NSB8 354 aa22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 ISY1Q9ULR0 285 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-206ENST00000473405 TRIM60Q495X7 471 aa22.24■■□□□ 1.15
CCDC88B-206ENST00000473405 ANKRD35Q8N283 1001 aa22.24■■□□□ 1.15
CCDC88B-206ENST00000473405 CHURC1Q8WUH1 139 aa22.24■■□□□ 1.15
CCDC88B-206ENST00000473405 AGBL1Q96MI9 1066 aa22.24■■□□□ 1.15
CCDC88B-206ENST00000473405 SYNRGQ9UMZ2 1314 aa22.24■■□□□ 1.15
CCDC88B-206ENST00000473405 ADAMTS4O75173 837 aa22.23■■□□□ 1.15
CCDC88B-206ENST00000473405 IKQ13123 557 aaPredicted RBP22.23■■□□□ 1.15
CCDC88B-206ENST00000473405 C1orf53Q5VUE5 145 aa22.23■■□□□ 1.15
CCDC88B-206ENST00000473405 RCSD1Q6JBY9 416 aa22.23■■□□□ 1.15
CCDC88B-206ENST00000473405 RILPL2Q969X0 211 aa22.23■■□□□ 1.15
CCDC88B-206ENST00000473405 OSBPL3Q9H4L5 887 aa22.23■■□□□ 1.15
CCDC88B-206ENST00000473405 ADCY6O43306 1168 aa22.22■■□□□ 1.15
CCDC88B-206ENST00000473405 RNF180Q86T96 592 aa22.22■■□□□ 1.15
CCDC88B-206ENST00000473405 ACAD9Q9H845 621 aa22.22■■□□□ 1.15
CCDC88B-206ENST00000473405 RNF146Q9NTX7 359 aa22.22■■□□□ 1.15
CCDC88B-206ENST00000473405 ZHX1Q9UKY1 873 aaPredicted RBP22.22■■□□□ 1.15
CCDC88B-206ENST00000473405 PRR12Q9ULL5 1215 aa22.22■■□□□ 1.15
CCDC88B-206ENST00000473405 A0A1W2PQ45 241 aaPredicted RBP22.21■■□□□ 1.15
CCDC88B-206ENST00000473405 A0A1W2PQY0 241 aa22.21■■□□□ 1.15
CCDC88B-206ENST00000473405 SNAP25P60880 206 aa22.21■■□□□ 1.15
CCDC88B-206ENST00000473405 HAND2P61296 217 aa22.21■■□□□ 1.15
CCDC88B-206ENST00000473405 CNTN2Q02246 1040 aa22.21■■□□□ 1.15
CCDC88B-206ENST00000473405 RRP12Q5JTH9 1297 aaKnown RBP22.21■■□□□ 1.15
CCDC88B-206ENST00000473405 TBC1D10CQ8IV04 446 aa22.21■■□□□ 1.15
CCDC88B-206ENST00000473405 A1CFQ9NQ94 594 aaKnown RBP22.21■■□□□ 1.15
CCDC88B-206ENST00000473405 PDLIM7Q9NR12 457 aa22.21■■□□□ 1.15
CCDC88B-206ENST00000473405 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.21■■□□□ 1.15
CCDC88B-206ENST00000473405 SDSP20132 328 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 ACVR2BQ13705 512 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 GPR153Q6NV75 609 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 ARMCX2Q7L311 632 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 FAM133AQ8N9E0 248 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 DCAF4Q8WV16 495 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 LBHD1Q9BQE6 289 aaPredicted RBP22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 KATNBL1Q9H079 304 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 TOMM22Q9NS69 142 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 TCP11L1Q9NUJ3 509 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 PRKAG2Q9UGJ0 569 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 FAM184BQ9ULE4 1060 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 MTMR7Q9Y216 660 aa22.2■■□□□ 1.14
CCDC88B-206ENST00000473405 CCSAPQ6IQ19 270 aaPredicted RBP22.19■■□□□ 1.14
CCDC88B-206ENST00000473405 CCDC174Q6PII3 467 aa22.19■■□□□ 1.14
CCDC88B-206ENST00000473405 SH3RF1Q7Z6J0 888 aa22.19■■□□□ 1.14
CCDC88B-206ENST00000473405 CCDC144CPQ8IYA2 1237 aa22.19■■□□□ 1.14
CCDC88B-206ENST00000473405 TMEM47Q9BQJ4 181 aa22.19■■□□□ 1.14
CCDC88B-206ENST00000473405 ABHD16BQ9H3Z7 469 aa22.19■■□□□ 1.14
CCDC88B-206ENST00000473405 PRDM5Q9NQX1 630 aaPredicted RBP22.19■■□□□ 1.14
CCDC88B-206ENST00000473405 ASTN1O14525 1302 aa22.19■■□□□ 1.14
CCDC88B-206ENST00000473405 MYADML2A6NDP7 307 aa22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 SOWAHBA6NEL2 793 aa22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 DUSP11O75319 330 aaKnown RBP22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 TOP1P11387 765 aaKnown RBP22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 TLE2Q04725 743 aa22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 CCDC96Q2M329 555 aa22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 TKFCQ3LXA3 575 aa22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 CCDC144BQ3MJ40 725 aa22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 MUM1L1Q5H9M0 696 aa22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 AKNAD1Q5T1N1 836 aa22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 KLHDC9Q8NEP7 349 aa22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 TRERF1Q96PN7 1200 aa22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 TSEN34Q9BSV6 310 aaKnown RBP22.18■■□□□ 1.14
CCDC88B-206ENST00000473405 NEDD4P46934 1319 aa22.17■■□□□ 1.14
CCDC88B-206ENST00000473405 TRIM43BA6NCK2 446 aa22.17■■□□□ 1.14
CCDC88B-206ENST00000473405 POTEB2H3BUK9 544 aa22.17■■□□□ 1.14
CCDC88B-206ENST00000473405 ALAS1P13196 640 aa22.17■■□□□ 1.14
CCDC88B-206ENST00000473405 ACLYP53396 1101 aa22.17■■□□□ 1.14
CCDC88B-206ENST00000473405 IRX5P78411 483 aaPredicted RBP22.17■■□□□ 1.14
CCDC88B-206ENST00000473405 TTBK2Q6IQ55 1244 aa22.17■■□□□ 1.14
CCDC88B-206ENST00000473405 BTNL9Q6UXG8 535 aa22.17■■□□□ 1.14
CCDC88B-206ENST00000473405 TRIM43Q96BQ3 446 aaPredicted RBP22.17■■□□□ 1.14
CCDC88B-206ENST00000473405 RANBP17Q9H2T7 1088 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-206ENST00000473405 CHD9Q3L8U1 2897 aa22.17■■□□□ 1.14
CCDC88B-206ENST00000473405 ICAM1P05362 532 aa22.16■■□□□ 1.14
CCDC88B-206ENST00000473405 PCP11498 1178 aaKnown RBP22.16■■□□□ 1.14
CCDC88B-206ENST00000473405 CST5P28325 142 aaPredicted RBP22.16■■□□□ 1.14
CCDC88B-206ENST00000473405 SLC16A2P36021 539 aa22.16■■□□□ 1.14
CCDC88B-206ENST00000473405 MFAP1P55081 439 aaKnown RBP22.16■■□□□ 1.14
CCDC88B-206ENST00000473405 MFSD6Q6ZSS7 791 aa22.16■■□□□ 1.14
CCDC88B-206ENST00000473405 Q7L0L9 218 aa22.16■■□□□ 1.14
CCDC88B-206ENST00000473405 UPF3AQ9H1J1 476 aaKnown RBP22.16■■□□□ 1.14
CCDC88B-206ENST00000473405 CYP39A1Q9NYL5 469 aa22.16■■□□□ 1.14
CCDC88B-206ENST00000473405 CCPG1Q9ULG6 757 aa22.16■■□□□ 1.14
CCDC88B-206ENST00000473405 DDX49Q9Y6V7 483 aaKnown RBP22.16■■□□□ 1.14
CCDC88B-206ENST00000473405 FRMPD2Q68DX3 1309 aaPredicted RBP22.15■■□□□ 1.14
CCDC88B-206ENST00000473405 ITGB8P26012 769 aa22.15■■□□□ 1.14
CCDC88B-206ENST00000473405 KCNA10Q16322 511 aa22.15■■□□□ 1.14
CCDC88B-206ENST00000473405 CWC27Q6UX04 472 aaKnown RBP22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms