RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 ZMYM6O95789 1325 aa16.05■□□□□ 0.16
CHD3-207ENST00000466233 SYNRGQ9UMZ2 1314 aa16.05■□□□□ 0.16
CHD3-207ENST00000466233 TRIM43BA6NCK2 446 aa16.05■□□□□ 0.16
CHD3-207ENST00000466233 DCDC2CA8MYV0 355 aa16.05■□□□□ 0.16
CHD3-207ENST00000466233 TMEM232C9JQI7 657 aa16.05■□□□□ 0.16
CHD3-207ENST00000466233 RRP1P56182 461 aaKnown RBP16.05■□□□□ 0.16
CHD3-207ENST00000466233 GJA9P57773 515 aa16.05■□□□□ 0.16
CHD3-207ENST00000466233 FAM133AQ8N9E0 248 aa16.05■□□□□ 0.16
CHD3-207ENST00000466233 BADQ92934 168 aa16.05■□□□□ 0.16
CHD3-207ENST00000466233 FERMT2Q96AC1 680 aa16.05■□□□□ 0.16
CHD3-207ENST00000466233 TRIM43Q96BQ3 446 aaPredicted RBP16.05■□□□□ 0.16
CHD3-207ENST00000466233 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.05■□□□□ 0.16
CHD3-207ENST00000466233 LTBP2Q14767 1821 aa16.05■□□□□ 0.16
CHD3-207ENST00000466233 COL6A3P12111 3177 aa16.05■□□□□ 0.16
CHD3-207ENST00000466233 PLXNA1Q9UIW2 1896 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 ASB14A6NK59 587 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 TSPY2A6NKD2 308 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 FOXP2O15409 715 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 MYCNP04198 464 aaPredicted RBP16.04■□□□□ 0.16
CHD3-207ENST00000466233 SHHQ15465 462 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 Q7L0L9 218 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 STK11IPQ8N1F8 1099 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 LRRC47Q8N1G4 583 aaKnown RBP16.04■□□□□ 0.16
CHD3-207ENST00000466233 OTUD7AQ8TE49 926 aaPredicted RBP16.04■□□□□ 0.16
CHD3-207ENST00000466233 FGD4Q96M96 766 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 GLT1D1Q96MS3 346 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 PRDM5Q9NQX1 630 aaPredicted RBP16.04■□□□□ 0.16
CHD3-207ENST00000466233 STARD7Q9NQZ5 370 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 IL17RBQ9NRM6 502 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 TCP11L1Q9NUJ3 509 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 Q9Y3F1 56 aa16.04■□□□□ 0.16
CHD3-207ENST00000466233 ZNF536O15090 1300 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 SMCHD1A6NHR9 2005 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 CDK7P50613 346 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 PDE1AP54750 535 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 KCNA10Q16322 511 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 CCDC144BQ3MJ40 725 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 ZNF697Q5TEC3 545 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 ARMCX2Q7L311 632 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 DCAF4Q8WV16 495 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 MAF1Q9H063 256 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 KATNBL1Q9H079 304 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 ZHX1Q9UKY1 873 aaPredicted RBP16.03■□□□□ 0.16
CHD3-207ENST00000466233 STX8Q9UNK0 236 aa16.03■□□□□ 0.16
CHD3-207ENST00000466233 CABYRO75952 493 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 RAG1P15918 1043 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 MCCP23508 829 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 FAAP100Q0VG06 881 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 MCMDC2Q4G0Z9 681 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 ANKRD45Q5TZF3 282 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 CCDC174Q6PII3 467 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 BTNL9Q6UXG8 535 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 CCDC129Q6ZRS4 1044 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 SH3RF1Q7Z6J0 888 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 CCDC144CPQ8IYA2 1237 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 TTC14Q96N46 770 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 A1CFQ9NQ94 594 aaKnown RBP16.02■□□□□ 0.16
CHD3-207ENST00000466233 TMEM39AQ9NV64 488 aa16.02■□□□□ 0.16
CHD3-207ENST00000466233 MYH4Q9Y623 1939 aa16.02■□□□□ 0.15
CHD3-207ENST00000466233 TIMP1P01033 207 aa16.01■□□□□ 0.15
CHD3-207ENST00000466233 FPGSQ05932 587 aa16.01■□□□□ 0.15
CHD3-207ENST00000466233 MORC4Q8TE76 937 aa16.01■□□□□ 0.15
CHD3-207ENST00000466233 RNF146Q9NTX7 359 aa16.01■□□□□ 0.15
CHD3-207ENST00000466233 TBX21Q9UL17 535 aa16.01■□□□□ 0.15
CHD3-207ENST00000466233 A0A0U1RQG5 324 aaPredicted RBP16■□□□□ 0.15
CHD3-207ENST00000466233 DLL1O00548 723 aa16■□□□□ 0.15
CHD3-207ENST00000466233 PQBP1O60828 265 aaKnown RBP16■□□□□ 0.15
CHD3-207ENST00000466233 ICAM1P05362 532 aa16■□□□□ 0.15
CHD3-207ENST00000466233 C6orf222P0C671 652 aaPredicted RBP16■□□□□ 0.15
CHD3-207ENST00000466233 MFAP1P55081 439 aaKnown RBP16■□□□□ 0.15
CHD3-207ENST00000466233 GNASQ5JWF2 1037 aa16■□□□□ 0.15
CHD3-207ENST00000466233 C9orf50Q5SZB4 431 aa16■□□□□ 0.15
CHD3-207ENST00000466233 IQSEC1Q6DN90 963 aa16■□□□□ 0.15
CHD3-207ENST00000466233 GUCD1Q96NT3 240 aa16■□□□□ 0.15
CHD3-207ENST00000466233 TRERF1Q96PN7 1200 aa16■□□□□ 0.15
CHD3-207ENST00000466233 PRR12Q9ULL5 1215 aa16■□□□□ 0.15
CHD3-207ENST00000466233 ARVCFO00192 962 aa15.99■□□□□ 0.15
CHD3-207ENST00000466233 RANBP6O60518 1105 aaKnown RBP15.99■□□□□ 0.15
CHD3-207ENST00000466233 FGAP02671 866 aa15.99■□□□□ 0.15
CHD3-207ENST00000466233 ASGR1P07306 291 aa15.99■□□□□ 0.15
CHD3-207ENST00000466233 TOP1P11387 765 aaKnown RBP15.99■□□□□ 0.15
CHD3-207ENST00000466233 ITGB8P26012 769 aa15.99■□□□□ 0.15
CHD3-207ENST00000466233 IKQ13123 557 aaPredicted RBP15.99■□□□□ 0.15
CHD3-207ENST00000466233 MFSD5Q6N075 450 aa15.99■□□□□ 0.15
CHD3-207ENST00000466233 SLC43A3Q8NBI5 491 aa15.99■□□□□ 0.15
CHD3-207ENST00000466233 AGBL1Q96MI9 1066 aa15.99■□□□□ 0.15
CHD3-207ENST00000466233 RANBP17Q9H2T7 1088 aaKnown RBP15.99■□□□□ 0.15
CHD3-207ENST00000466233 SEMA6BQ9H3T3 888 aa15.99■□□□□ 0.15
CHD3-207ENST00000466233 OSBPL3Q9H4L5 887 aa15.99■□□□□ 0.15
CHD3-207ENST00000466233 CYP39A1Q9NYL5 469 aa15.99■□□□□ 0.15
CHD3-207ENST00000466233 GNEQ9Y223 722 aaKnown RBP15.99■□□□□ 0.15
CHD3-207ENST00000466233 A0A0C4DFX4 3053 aa15.98■□□□□ 0.15
CHD3-207ENST00000466233 SOWAHBA6NEL2 793 aa15.98■□□□□ 0.15
CHD3-207ENST00000466233 CTAGE5O15320 804 aa15.98■□□□□ 0.15
CHD3-207ENST00000466233 TLR3O15455 904 aaKnown RBP15.98■□□□□ 0.15
CHD3-207ENST00000466233 ZEB2O60315 1214 aa15.98■□□□□ 0.15
CHD3-207ENST00000466233 HSPD1P10809 573 aaKnown RBP15.98■□□□□ 0.15
CHD3-207ENST00000466233 SLC4A3P48751 1232 aa15.98■□□□□ 0.15
CHD3-207ENST00000466233 CNTN2Q02246 1040 aa15.98■□□□□ 0.15
CHD3-207ENST00000466233 TNFAIP2Q03169 654 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms