RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 TMEM87BQ96K49 555 aa13.62□□□□□ -0.23
CUX1-207ENST00000465461 MMP19Q99542 508 aa13.62□□□□□ -0.23
CUX1-207ENST00000465461 MROH8Q9H579 483 aa13.62□□□□□ -0.23
CUX1-207ENST00000465461 FLRT1Q9NZU1 646 aa13.62□□□□□ -0.23
CUX1-207ENST00000465461 BIN2Q9UBW5 565 aaPredicted RBP13.62□□□□□ -0.23
CUX1-207ENST00000465461 SMCHD1A6NHR9 2005 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 PALM3A6NDB9 673 aaPredicted RBP13.61□□□□□ -0.23
CUX1-207ENST00000465461 CCDC69A6NI79 296 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 SLC15A5A6NIM6 579 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 KLRF2D3W0D1 207 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 ATP2A1O14983 1001 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 DHX16O60231 1041 aaKnown RBP13.61□□□□□ -0.23
CUX1-207ENST00000465461 CASTP20810 708 aaKnown RBP13.61□□□□□ -0.23
CUX1-207ENST00000465461 RGS2P41220 211 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 SOX10P56693 466 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 ASPRV1Q53RT3 343 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 MUM1L1Q5H9M0 696 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 GPATCH4Q5T3I0 446 aaKnown RBP13.61□□□□□ -0.23
CUX1-207ENST00000465461 BLOC1S2Q6QNY1 142 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 Q6ZUG5 572 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 DPP9Q86TI2 863 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 SOCS4Q8WXH5 440 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 PIBF1Q8WXW3 757 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 BRPF3Q9ULD4 1205 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 CCPG1Q9ULG6 757 aa13.61□□□□□ -0.23
CUX1-207ENST00000465461 INHAP05111 366 aa13.6□□□□□ -0.23
CUX1-207ENST00000465461 FCER1AP12319 257 aa13.6□□□□□ -0.23
CUX1-207ENST00000465461 LIFRP42702 1097 aa13.6□□□□□ -0.23
CUX1-207ENST00000465461 OAZ1P54368 228 aa13.6□□□□□ -0.23
CUX1-207ENST00000465461 CDC37Q16543 378 aaPredicted RBP13.6□□□□□ -0.23
CUX1-207ENST00000465461 CMTR1Q8N1G2 835 aaKnown RBP13.6□□□□□ -0.23
CUX1-207ENST00000465461 SLAIN1Q8ND83 568 aa13.6□□□□□ -0.23
CUX1-207ENST00000465461 ARMC5Q96C12 935 aa13.6□□□□□ -0.23
CUX1-207ENST00000465461 ZNF333Q96JL9 665 aa13.6□□□□□ -0.23
CUX1-207ENST00000465461 TRERF1Q96PN7 1200 aa13.6□□□□□ -0.23
CUX1-207ENST00000465461 LARP6Q9BRS8 491 aaKnown RBP13.6□□□□□ -0.23
CUX1-207ENST00000465461 JMJD4Q9H9V9 463 aa13.6□□□□□ -0.23
CUX1-207ENST00000465461 RNF146Q9NTX7 359 aa13.6□□□□□ -0.23
CUX1-207ENST00000465461 SLC12A7Q9Y666 1083 aa13.6□□□□□ -0.23
CUX1-207ENST00000465461 ZNFX1Q9P2E3 1918 aaKnown RBP13.59□□□□□ -0.23
CUX1-207ENST00000465461 EPB41L2O43491 1005 aaKnown RBP13.59□□□□□ -0.23
CUX1-207ENST00000465461 CYTH3O43739 400 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 STRNO43815 780 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 ICAM1P05362 532 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 FDX1P10109 184 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 RPS6KB1P23443 525 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 APOBRQ0VD83 1088 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 KCTD2Q14681 263 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 QRICH1Q2TAL8 776 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 USH1GQ495M9 461 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 TMTC2Q8N394 836 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 PXYLP1Q8TE99 480 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 APBA2Q99767 749 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 MTA3Q9BTC8 594 aa13.59□□□□□ -0.23
CUX1-207ENST00000465461 UPF3BQ9BZI7 483 aaKnown RBP13.59□□□□□ -0.23
CUX1-207ENST00000465461 NAP1L2Q9ULW6 460 aaPredicted RBP13.59□□□□□ -0.23
CUX1-207ENST00000465461 POTEFA5A3E0 1075 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 DDAH1O94760 285 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 PLEKHA8P1O95397 391 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 HMGB1P09429 215 aaKnown RBP13.58□□□□□ -0.24
CUX1-207ENST00000465461 PSMA5P28066 241 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 FGD1P98174 961 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 SGMS1Q86VZ5 419 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 MICU3Q86XE3 530 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 HOMER1Q86YM7 354 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 ANKRD35Q8N283 1001 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 CCDC82Q8N4S0 544 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 CHST13Q8NET6 341 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 CTCFLQ8NI51 663 aaPredicted RBP13.58□□□□□ -0.24
CUX1-207ENST00000465461 BRF1Q92994 677 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 DDX11Q96FC9 970 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 PURBQ96QR8 312 aaKnown RBP13.58□□□□□ -0.24
CUX1-207ENST00000465461 PIGSQ96S52 555 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 UNC93B1Q9H1C4 597 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 ACAD9Q9H845 621 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 ZSWIM6Q9HCJ5 1215 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 WDR19Q8NEZ3 1342 aa13.58□□□□□ -0.24
CUX1-207ENST00000465461 KLF18A0A0U1RQI7 1052 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 NFIBO00712 420 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 PPP1R11O60927 126 aaPredicted RBP13.57□□□□□ -0.24
CUX1-207ENST00000465461 XRCC5P13010 732 aaKnown RBP13.57□□□□□ -0.24
CUX1-207ENST00000465461 CCL5P13501 91 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 CYP2C19P33261 490 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 COPB2P35606 906 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 UBXN2AP68543 259 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 ZNF792Q3KQV3 632 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 PRAMEF19Q5SWL8 479 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 NSMFQ6X4W1 530 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 RUFY3Q7L099 469 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 ABRAQ8N0Z2 381 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 SRBD1Q8N5C6 995 aaKnown RBP13.57□□□□□ -0.24
CUX1-207ENST00000465461 CLEC4DQ8WXI8 215 aa13.57□□□□□ -0.24
CUX1-207ENST00000465461 A1CFQ9NQ94 594 aaKnown RBP13.57□□□□□ -0.24
CUX1-207ENST00000465461 DDX49Q9Y6V7 483 aaKnown RBP13.57□□□□□ -0.24
CUX1-207ENST00000465461 hCG_1642624A0A1W2PR95 340 aa13.56□□□□□ -0.24
CUX1-207ENST00000465461 HMGCRP04035 888 aa13.56□□□□□ -0.24
CUX1-207ENST00000465461 HOXC6P09630 235 aa13.56□□□□□ -0.24
CUX1-207ENST00000465461 PRKAR2AP13861 404 aaKnown RBP13.56□□□□□ -0.24
CUX1-207ENST00000465461 CCND3P30281 292 aaPredicted RBP13.56□□□□□ -0.24
CUX1-207ENST00000465461 CNTN2Q02246 1040 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms