RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 USP17L19D6RCP7 530 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 USP17L20D6RJB6 530 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 SNAP23O00161 211 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 PITPNM1O00562 1244 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 CAPN9O14815 690 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 ZEB2O60315 1214 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 GDF9O60383 454 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 ENTPD3O75355 529 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 TAF5LO75529 589 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 RB1P06400 928 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 ZNF865P0CJ78 1059 aaPredicted RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 SRGAP2BP0DMP2 458 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 CYP2C9P11712 490 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 FCER1AP12319 257 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 HOXD8P13378 290 aaPredicted RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 SMPD1P17405 629 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 TAL1P17542 331 aaPredicted RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 NCLP19338 710 aaKnown RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 HIBADHP31937 336 aaKnown RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 NOVA1P51513 510 aaKnown RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 GJA9P57773 515 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 USP17L24Q0WX57 530 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 TROAPQ12815 778 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 CHAF1AQ13111 956 aaPredicted RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 BFSP2Q13515 415 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 UBE4AQ14139 1066 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 CCDC6Q16204 474 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 LRRFIP1Q32MZ4 808 aaKnown RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 KRTAP21-3Q3LHN1 58 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 AASDHQ4L235 1098 aaPredicted RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 SPECC1Q5M775 1068 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 LAIR1Q6GTX8 287 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 PSAPL1Q6NUJ1 521 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 VPS37DQ86XT2 251 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 CCDC191Q8NCU4 936 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 HNRNPLLQ8WVV9 542 aaKnown RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 MAP4K1Q92918 833 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 PHACTR3Q96KR7 559 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 YME1L1Q96TA2 773 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 TINF2Q9BSI4 451 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 WDR18Q9BV38 432 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 SCNM1Q9BWG6 230 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 ALDH8A1Q9H2A2 487 aaPredicted RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 SMOC2Q9H3U7 446 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 ERVK-5Q9HDB9 667 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 USP40Q9NVE5 1235 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 ZSCAN32Q9NX65 697 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 FAM198AQ9UFP1 575 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 FBXO4Q9UKT5 387 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 ZHX1Q9UKY1 873 aaPredicted RBP3.36□□□□□ -1.87
USP40-211ENST00000464956 MYO9BQ13459 2157 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 MAPK8IP3Q9UPT6 1336 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 DNAH14Q0VDD8 3507 aa3.36□□□□□ -1.87
USP40-211ENST00000464956 EP300Q09472 2414 aaPredicted RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 FAM205CA6NFA0 338 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 ATXN7O15265 892 aaPredicted RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 LAMTOR5O43504 91 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 TBC1D12O60347 775 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 CSPG5O95196 566 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 PARNO95453 639 aaKnown RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 AMHP03971 560 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 ASGR2P07307 311 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 RETP07949 1114 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 ERCC3P19447 782 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 ITGA6P23229 1130 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 PRKAR2BP31323 418 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 CTNNB1P35222 781 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 CAP2P40123 477 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 ZNF252P-AS1Q0IIN9 211 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 IKBKEQ14164 716 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 GRIK5Q16478 980 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 SNRNP48Q6IEG0 339 aaKnown RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 CNKSR3Q6P9H4 555 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 USP17L2Q6R6M4 530 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 CXCL17Q6UXB2 119 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 LBX2Q6XYB7 198 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 PLCD3Q8N3E9 789 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 ZNF843Q8N446 348 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 MSL3Q8N5Y2 521 aaKnown RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 C12orf50Q8NA57 414 aaPredicted RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 LSM14AQ8ND56 463 aaKnown RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 SP7Q8TDD2 431 aaPredicted RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 SPIRE2Q8WWL2 714 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 MOV10L1Q9BXT6 1211 aaKnown RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 UPF3AQ9H1J1 476 aaKnown RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 MROH8Q9H579 483 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 SCUBE2Q9NQ36 999 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 CWC25Q9NXE8 425 aaPredicted RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 BTBD7Q9P203 1132 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 WASF3Q9UPY6 502 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 DIS3Q9Y2L1 958 aaKnown RBP3.35□□□□□ -1.87
USP40-211ENST00000464956 SIT1Q9Y3P8 196 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 RWDD3Q9Y3V2 267 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 NEUROG3Q9Y4Z2 214 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 PAXBP1Q9Y5B6 917 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 ZNF462Q96JM2 2506 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 DMXL1Q9Y485 3027 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 PLXNB2O15031 1838 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 DNAH12Q6ZR08 3092 aa3.35□□□□□ -1.87
USP40-211ENST00000464956 DDTLA6NHG4 134 aaPredicted RBP3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms