RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 SUPT16HQ9Y5B9 1047 aaKnown RBP22.28■■□□□ 1.16
SF3A1-205ENST00000463818 ZNF536O15090 1300 aa22.28■■□□□ 1.16
SF3A1-205ENST00000463818 SNAP25P60880 206 aa22.27■■□□□ 1.16
SF3A1-205ENST00000463818 RASGRP2Q7LDG7 609 aa22.27■■□□□ 1.16
SF3A1-205ENST00000463818 TDHQ8IZJ6 230 aa22.27■■□□□ 1.16
SF3A1-205ENST00000463818 FGD4Q96M96 766 aa22.27■■□□□ 1.16
SF3A1-205ENST00000463818 ACAD9Q9H845 621 aa22.27■■□□□ 1.16
SF3A1-205ENST00000463818 TCP11L1Q9NUJ3 509 aa22.27■■□□□ 1.16
SF3A1-205ENST00000463818 PRKAG2Q9UGJ0 569 aa22.27■■□□□ 1.16
SF3A1-205ENST00000463818 ZHX1Q9UKY1 873 aaPredicted RBP22.27■■□□□ 1.16
SF3A1-205ENST00000463818 PRR12Q9ULL5 1215 aa22.27■■□□□ 1.16
SF3A1-205ENST00000463818 PHF24Q9UPV7 400 aa22.27■■□□□ 1.16
SF3A1-205ENST00000463818 MFAP1P55081 439 aaKnown RBP22.26■■□□□ 1.15
SF3A1-205ENST00000463818 ACVR2BQ13705 512 aa22.26■■□□□ 1.15
SF3A1-205ENST00000463818 TKFCQ3LXA3 575 aa22.26■■□□□ 1.15
SF3A1-205ENST00000463818 CCDC174Q6PII3 467 aa22.26■■□□□ 1.15
SF3A1-205ENST00000463818 DCAF4Q8WV16 495 aa22.26■■□□□ 1.15
SF3A1-205ENST00000463818 LENG1Q96BZ8 264 aaPredicted RBP22.26■■□□□ 1.15
SF3A1-205ENST00000463818 TRERF1Q96PN7 1200 aa22.26■■□□□ 1.15
SF3A1-205ENST00000463818 LBHD1Q9BQE6 289 aaPredicted RBP22.26■■□□□ 1.15
SF3A1-205ENST00000463818 TMEM47Q9BQJ4 181 aa22.26■■□□□ 1.15
SF3A1-205ENST00000463818 RNF146Q9NTX7 359 aa22.26■■□□□ 1.15
SF3A1-205ENST00000463818 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.26■■□□□ 1.15
SF3A1-205ENST00000463818 ZMYM6O95789 1325 aa22.26■■□□□ 1.15
SF3A1-205ENST00000463818 POTEB2H3BUK9 544 aa22.25■■□□□ 1.15
SF3A1-205ENST00000463818 TOP1P11387 765 aaKnown RBP22.25■■□□□ 1.15
SF3A1-205ENST00000463818 ALAS1P13196 640 aa22.25■■□□□ 1.15
SF3A1-205ENST00000463818 CNTN2Q02246 1040 aa22.25■■□□□ 1.15
SF3A1-205ENST00000463818 SNX17Q15036 470 aa22.25■■□□□ 1.15
SF3A1-205ENST00000463818 CCDC96Q2M329 555 aa22.25■■□□□ 1.15
SF3A1-205ENST00000463818 TRIM60Q495X7 471 aa22.25■■□□□ 1.15
SF3A1-205ENST00000463818 AKNAD1Q5T1N1 836 aa22.25■■□□□ 1.15
SF3A1-205ENST00000463818 TTBK2Q6IQ55 1244 aa22.25■■□□□ 1.15
SF3A1-205ENST00000463818 MFSD6Q6ZSS7 791 aa22.25■■□□□ 1.15
SF3A1-205ENST00000463818 MYH4Q9Y623 1939 aa22.25■■□□□ 1.15
SF3A1-205ENST00000463818 LRIT3Q3SXY7 679 aa22.24■■□□□ 1.15
SF3A1-205ENST00000463818 CWC27Q6UX04 472 aaKnown RBP22.24■■□□□ 1.15
SF3A1-205ENST00000463818 ABHD16BQ9H3Z7 469 aa22.24■■□□□ 1.15
SF3A1-205ENST00000463818 A1CFQ9NQ94 594 aaKnown RBP22.24■■□□□ 1.15
SF3A1-205ENST00000463818 SMCHD1A6NHR9 2005 aa22.23■■□□□ 1.15
SF3A1-205ENST00000463818 ADAMTS4O75173 837 aa22.23■■□□□ 1.15
SF3A1-205ENST00000463818 SLC16A2P36021 539 aa22.23■■□□□ 1.15
SF3A1-205ENST00000463818 C1orf53Q5VUE5 145 aa22.23■■□□□ 1.15
SF3A1-205ENST00000463818 ARMCX2Q7L311 632 aa22.23■■□□□ 1.15
SF3A1-205ENST00000463818 CCDC144CPQ8IYA2 1237 aa22.23■■□□□ 1.15
SF3A1-205ENST00000463818 FAM133AQ8N9E0 248 aa22.23■■□□□ 1.15
SF3A1-205ENST00000463818 DIAPH3Q9NSV4 1193 aa22.23■■□□□ 1.15
SF3A1-205ENST00000463818 FRMPD3Q5JV73 1810 aa22.22■■□□□ 1.15
SF3A1-205ENST00000463818 DUSP11O75319 330 aaKnown RBP22.22■■□□□ 1.15
SF3A1-205ENST00000463818 PCP11498 1178 aaKnown RBP22.22■■□□□ 1.15
SF3A1-205ENST00000463818 TLE2Q04725 743 aa22.22■■□□□ 1.15
SF3A1-205ENST00000463818 BTNL9Q6UXG8 535 aa22.22■■□□□ 1.15
SF3A1-205ENST00000463818 TBC1D10CQ8IV04 446 aa22.22■■□□□ 1.15
SF3A1-205ENST00000463818 KLHDC9Q8NEP7 349 aa22.22■■□□□ 1.15
SF3A1-205ENST00000463818 TTC14Q96N46 770 aa22.22■■□□□ 1.15
SF3A1-205ENST00000463818 TSEN34Q9BSV6 310 aaKnown RBP22.22■■□□□ 1.15
SF3A1-205ENST00000463818 RNF41Q9H4P4 317 aaPredicted RBP22.22■■□□□ 1.15
SF3A1-205ENST00000463818 GPCPD1Q9NPB8 672 aa22.22■■□□□ 1.15
SF3A1-205ENST00000463818 PRDM5Q9NQX1 630 aaPredicted RBP22.22■■□□□ 1.15
SF3A1-205ENST00000463818 SZT2Q5T011 3432 aa22.21■■□□□ 1.15
SF3A1-205ENST00000463818 A0A1W2PQ45 241 aaPredicted RBP22.21■■□□□ 1.15
SF3A1-205ENST00000463818 A0A1W2PQY0 241 aa22.21■■□□□ 1.15
SF3A1-205ENST00000463818 SOWAHBA6NEL2 793 aa22.21■■□□□ 1.15
SF3A1-205ENST00000463818 ZNF213O14771 459 aa22.21■■□□□ 1.15
SF3A1-205ENST00000463818 CCDC144BQ3MJ40 725 aa22.21■■□□□ 1.15
SF3A1-205ENST00000463818 MUM1L1Q5H9M0 696 aa22.21■■□□□ 1.15
SF3A1-205ENST00000463818 SYDE2Q5VT97 1194 aa22.21■■□□□ 1.15
SF3A1-205ENST00000463818 CCPG1Q9ULG6 757 aa22.21■■□□□ 1.15
SF3A1-205ENST00000463818 SYNRGQ9UMZ2 1314 aa22.21■■□□□ 1.15
SF3A1-205ENST00000463818 HIP1O00291 1037 aa22.2■■□□□ 1.14
SF3A1-205ENST00000463818 ICAM1P05362 532 aa22.2■■□□□ 1.14
SF3A1-205ENST00000463818 ACLYP53396 1101 aa22.2■■□□□ 1.14
SF3A1-205ENST00000463818 KCNA10Q16322 511 aa22.2■■□□□ 1.14
SF3A1-205ENST00000463818 SH3RF1Q7Z6J0 888 aa22.2■■□□□ 1.14
SF3A1-205ENST00000463818 KATNBL1Q9H079 304 aa22.2■■□□□ 1.14
SF3A1-205ENST00000463818 RANBP17Q9H2T7 1088 aaKnown RBP22.2■■□□□ 1.14
SF3A1-205ENST00000463818 PDLIM7Q9NR12 457 aa22.2■■□□□ 1.14
SF3A1-205ENST00000463818 FRMPD2Q68DX3 1309 aaPredicted RBP22.2■■□□□ 1.14
SF3A1-205ENST00000463818 TRIM43BA6NCK2 446 aa22.19■■□□□ 1.14
SF3A1-205ENST00000463818 ASB14A6NK59 587 aa22.19■■□□□ 1.14
SF3A1-205ENST00000463818 ADCY6O43306 1168 aa22.19■■□□□ 1.14
SF3A1-205ENST00000463818 IRX5P78411 483 aaPredicted RBP22.19■■□□□ 1.14
SF3A1-205ENST00000463818 CCSAPQ6IQ19 270 aaPredicted RBP22.19■■□□□ 1.14
SF3A1-205ENST00000463818 GPR153Q6NV75 609 aa22.19■■□□□ 1.14
SF3A1-205ENST00000463818 ESR2Q92731 530 aa22.19■■□□□ 1.14
SF3A1-205ENST00000463818 TRIM43Q96BQ3 446 aaPredicted RBP22.19■■□□□ 1.14
SF3A1-205ENST00000463818 MYADML2A6NDP7 307 aa22.18■■□□□ 1.14
SF3A1-205ENST00000463818 MOXD2PA6NHM9 499 aa22.18■■□□□ 1.14
SF3A1-205ENST00000463818 C6orf222P0C671 652 aaPredicted RBP22.18■■□□□ 1.14
SF3A1-205ENST00000463818 PDHBP11177 359 aa22.18■■□□□ 1.14
SF3A1-205ENST00000463818 NSMFQ6X4W1 530 aa22.18■■□□□ 1.14
SF3A1-205ENST00000463818 BADQ92934 168 aa22.18■■□□□ 1.14
SF3A1-205ENST00000463818 ZKSCAN3Q9BRR0 538 aa22.18■■□□□ 1.14
SF3A1-205ENST00000463818 SPC25Q9HBM1 224 aa22.18■■□□□ 1.14
SF3A1-205ENST00000463818 CYP39A1Q9NYL5 469 aa22.18■■□□□ 1.14
SF3A1-205ENST00000463818 PLXNA1Q9UIW2 1896 aa22.17■■□□□ 1.14
SF3A1-205ENST00000463818 NEDD4P46934 1319 aa22.17■■□□□ 1.14
SF3A1-205ENST00000463818 GJA9P57773 515 aa22.17■■□□□ 1.14
SF3A1-205ENST00000463818 ZNF543Q08ER8 600 aa22.17■■□□□ 1.14
SF3A1-205ENST00000463818 NUP133Q8WUM0 1156 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms