RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 NOL8Q76FK4 1167 aaKnown RBP17.34■□□□□ 0.37
SMC1A-204ENST00000463684 ARMCX2Q7L311 632 aa17.34■□□□□ 0.37
SMC1A-204ENST00000463684 CHST13Q8NET6 341 aa17.34■□□□□ 0.37
SMC1A-204ENST00000463684 KIFC2Q96AC6 838 aa17.34■□□□□ 0.37
SMC1A-204ENST00000463684 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.34■□□□□ 0.37
SMC1A-204ENST00000463684 HIPK3Q9H422 1215 aa17.34■□□□□ 0.37
SMC1A-204ENST00000463684 ARPP21Q9UBL0 812 aaPredicted RBP17.34■□□□□ 0.37
SMC1A-204ENST00000463684 COL11A1P12107 1806 aaPredicted RBP17.33■□□□□ 0.37
SMC1A-204ENST00000463684 HMMRO75330 724 aa17.33■□□□□ 0.36
SMC1A-204ENST00000463684 CABYRO75952 493 aa17.33■□□□□ 0.36
SMC1A-204ENST00000463684 NDUFB10O96000 172 aa17.33■□□□□ 0.36
SMC1A-204ENST00000463684 ATP5JP18859 108 aa17.33■□□□□ 0.36
SMC1A-204ENST00000463684 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.33■□□□□ 0.36
SMC1A-204ENST00000463684 OTOP2Q7RTS6 562 aa17.33■□□□□ 0.36
SMC1A-204ENST00000463684 FAM122AQ96E09 287 aa17.33■□□□□ 0.36
SMC1A-204ENST00000463684 CXXC1Q9P0U4 656 aaPredicted RBP17.33■□□□□ 0.36
SMC1A-204ENST00000463684 CLIP2Q9UDT6 1046 aa17.33■□□□□ 0.36
SMC1A-204ENST00000463684 FEM1BQ9UK73 627 aa17.33■□□□□ 0.36
SMC1A-204ENST00000463684 PLXNA1Q9UIW2 1896 aa17.33■□□□□ 0.36
SMC1A-204ENST00000463684 ZBED9Q6R2W3 1325 aa17.32■□□□□ 0.36
SMC1A-204ENST00000463684 RAB11FIP3O75154 756 aa17.32■□□□□ 0.36
SMC1A-204ENST00000463684 PLA2G5P39877 138 aa17.32■□□□□ 0.36
SMC1A-204ENST00000463684 BEX3Q00994 111 aa17.32■□□□□ 0.36
SMC1A-204ENST00000463684 TNFAIP2Q03169 654 aa17.32■□□□□ 0.36
SMC1A-204ENST00000463684 RPAP2Q8IXW5 612 aaPredicted RBP17.32■□□□□ 0.36
SMC1A-204ENST00000463684 CCDC144CPQ8IYA2 1237 aa17.32■□□□□ 0.36
SMC1A-204ENST00000463684 STK11IPQ8N1F8 1099 aa17.32■□□□□ 0.36
SMC1A-204ENST00000463684 HAUS7Q99871 368 aa17.32■□□□□ 0.36
SMC1A-204ENST00000463684 SEZ6LQ9BYH1 1024 aa17.32■□□□□ 0.36
SMC1A-204ENST00000463684 SLC38A10Q9HBR0 1119 aa17.32■□□□□ 0.36
SMC1A-204ENST00000463684 YBX2Q9Y2T7 364 aaKnown RBP17.32■□□□□ 0.36
SMC1A-204ENST00000463684 PARP14Q460N5 1801 aa17.32■□□□□ 0.36
SMC1A-204ENST00000463684 ZEB2O60315 1214 aa17.31■□□□□ 0.36
SMC1A-204ENST00000463684 RASA1P20936 1047 aa17.31■□□□□ 0.36
SMC1A-204ENST00000463684 OAZ1P54368 228 aa17.31■□□□□ 0.36
SMC1A-204ENST00000463684 NKX3-2P78367 333 aa17.31■□□□□ 0.36
SMC1A-204ENST00000463684 ITGA7Q13683 1181 aa17.31■□□□□ 0.36
SMC1A-204ENST00000463684 AAK1Q2M2I8 961 aa17.31■□□□□ 0.36
SMC1A-204ENST00000463684 CXCL17Q6UXB2 119 aa17.31■□□□□ 0.36
SMC1A-204ENST00000463684 RPUSD2Q8IZ73 545 aaKnown RBP17.31■□□□□ 0.36
SMC1A-204ENST00000463684 MICALL1Q8N3F8 863 aa17.31■□□□□ 0.36
SMC1A-204ENST00000463684 PUS7LQ9H0K6 701 aaKnown RBP17.31■□□□□ 0.36
SMC1A-204ENST00000463684 AP5M1Q9H0R1 490 aa17.31■□□□□ 0.36
SMC1A-204ENST00000463684 SLC4A7Q9Y6M7 1214 aa17.31■□□□□ 0.36
SMC1A-204ENST00000463684 MYH8P13535 1937 aa17.3■□□□□ 0.36
SMC1A-204ENST00000463684 CTAGE5O15320 804 aa17.3■□□□□ 0.36
SMC1A-204ENST00000463684 CHGBP05060 677 aa17.3■□□□□ 0.36
SMC1A-204ENST00000463684 CCL23P55773 120 aa17.3■□□□□ 0.36
SMC1A-204ENST00000463684 SBK1Q52WX2 424 aa17.3■□□□□ 0.36
SMC1A-204ENST00000463684 PPP2R2DQ66LE6 453 aa17.3■□□□□ 0.36
SMC1A-204ENST00000463684 ZNF444Q8N0Y2 327 aaPredicted RBP17.3■□□□□ 0.36
SMC1A-204ENST00000463684 SLC43A3Q8NBI5 491 aa17.3■□□□□ 0.36
SMC1A-204ENST00000463684 FGD4Q96M96 766 aa17.3■□□□□ 0.36
SMC1A-204ENST00000463684 C1QTNF1Q9BXJ1 281 aa17.3■□□□□ 0.36
SMC1A-204ENST00000463684 ZNF287Q9HBT7 754 aa17.3■□□□□ 0.36
SMC1A-204ENST00000463684 HOMER2Q9NSB8 354 aa17.3■□□□□ 0.36
SMC1A-204ENST00000463684 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.29■□□□□ 0.36
SMC1A-204ENST00000463684 ASB14A6NK59 587 aa17.29■□□□□ 0.36
SMC1A-204ENST00000463684 MINDY4BA8MYZ0 360 aa17.29■□□□□ 0.36
SMC1A-204ENST00000463684 FDX1P10109 184 aa17.29■□□□□ 0.36
SMC1A-204ENST00000463684 CNTN2Q02246 1040 aa17.29■□□□□ 0.36
SMC1A-204ENST00000463684 SKIV2LQ15477 1246 aaKnown RBP17.29■□□□□ 0.36
SMC1A-204ENST00000463684 FSCN1Q16658 493 aaKnown RBP17.29■□□□□ 0.36
SMC1A-204ENST00000463684 PANK1Q8TE04 598 aa17.29■□□□□ 0.36
SMC1A-204ENST00000463684 KATNBL1Q9H079 304 aa17.29■□□□□ 0.36
SMC1A-204ENST00000463684 PCDHA11Q9Y5I1 949 aa17.29■□□□□ 0.36
SMC1A-204ENST00000463684 CHD9Q3L8U1 2897 aa17.29■□□□□ 0.36
SMC1A-204ENST00000463684 UMODL1Q5DID0 1318 aa17.28■□□□□ 0.36
SMC1A-204ENST00000463684 ZBBXA8MT70 800 aa17.28■□□□□ 0.36
SMC1A-204ENST00000463684 DYNC1LI2O43237 492 aaPredicted RBP17.28■□□□□ 0.36
SMC1A-204ENST00000463684 BMP1P13497 986 aa17.28■□□□□ 0.36
SMC1A-204ENST00000463684 RABGGTBP53611 331 aa17.28■□□□□ 0.36
SMC1A-204ENST00000463684 GIMAP6Q6P9H5 292 aa17.28■□□□□ 0.36
SMC1A-204ENST00000463684 TLK2Q86UE8 772 aa17.28■□□□□ 0.36
SMC1A-204ENST00000463684 MKL1Q969V6 931 aa17.28■□□□□ 0.36
SMC1A-204ENST00000463684 STRBPQ96SI9 672 aaKnown RBP17.28■□□□□ 0.36
SMC1A-204ENST00000463684 TRPV6Q9H1D0 765 aa17.28■□□□□ 0.36
SMC1A-204ENST00000463684 ACAD9Q9H845 621 aa17.28■□□□□ 0.36
SMC1A-204ENST00000463684 ISY1Q9ULR0 285 aaKnown RBP17.28■□□□□ 0.36
SMC1A-204ENST00000463684 COG6Q9Y2V7 657 aa17.28■□□□□ 0.36
SMC1A-204ENST00000463684 MS4A1P11836 297 aa17.27■□□□□ 0.36
SMC1A-204ENST00000463684 FAM133AQ8N9E0 248 aa17.27■□□□□ 0.36
SMC1A-204ENST00000463684 NOC4LQ9BVI4 516 aaKnown RBP17.27■□□□□ 0.36
SMC1A-204ENST00000463684 SYNPO2Q9UMS6 1093 aa17.27■□□□□ 0.36
SMC1A-204ENST00000463684 GNEQ9Y223 722 aaKnown RBP17.27■□□□□ 0.36
SMC1A-204ENST00000463684 BAZ2AQ9UIF9 1905 aaKnown RBP17.27■□□□□ 0.35
SMC1A-204ENST00000463684 ASTN1O14525 1302 aa17.26■□□□□ 0.35
SMC1A-204ENST00000463684 GSG1L2A8MUP6 293 aa17.26■□□□□ 0.35
SMC1A-204ENST00000463684 GTPBP6O43824 516 aaPredicted RBP17.26■□□□□ 0.35
SMC1A-204ENST00000463684 B4GALT4O60513 344 aa17.26■□□□□ 0.35
SMC1A-204ENST00000463684 TTLL1O95922 423 aa17.26■□□□□ 0.35
SMC1A-204ENST00000463684 BMP3P12645 472 aa17.26■□□□□ 0.35
SMC1A-204ENST00000463684 ATP2A2P16615 1042 aaKnown RBP17.26■□□□□ 0.35
SMC1A-204ENST00000463684 IQSEC1Q6DN90 963 aa17.26■□□□□ 0.35
SMC1A-204ENST00000463684 GMCL1P1Q8NEA9 526 aa17.26■□□□□ 0.35
SMC1A-204ENST00000463684 NECAB3Q96P71 396 aaPredicted RBP17.26■□□□□ 0.35
SMC1A-204ENST00000463684 MTMR4Q9NYA4 1195 aa17.26■□□□□ 0.35
SMC1A-204ENST00000463684 GRIN2DO15399 1336 aa17.25■□□□□ 0.35
SMC1A-204ENST00000463684 IGKV6D-41A0A0C4DH26 115 aa17.25■□□□□ 0.35
SMC1A-204ENST00000463684 SOWAHBA6NEL2 793 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms