RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 MTMR10Q9NXD2 777 aa21.79■■□□□ 1.08
HOXD3-204ENST00000459979 DNAH12Q6ZR08 3092 aa21.78■■□□□ 1.08
HOXD3-204ENST00000459979 TMEM232C9JQI7 657 aa21.78■■□□□ 1.08
HOXD3-204ENST00000459979 PTH1RQ03431 593 aa21.78■■□□□ 1.08
HOXD3-204ENST00000459979 OLFML2BQ68BL8 750 aa21.78■■□□□ 1.08
HOXD3-204ENST00000459979 KRT23Q9C075 422 aa21.78■■□□□ 1.08
HOXD3-204ENST00000459979 CNNM2Q9H8M5 875 aa21.78■■□□□ 1.08
HOXD3-204ENST00000459979 U3KPZ7 1027 aaPredicted RBP21.78■■□□□ 1.08
HOXD3-204ENST00000459979 KDM4AO75164 1064 aa21.77■■□□□ 1.08
HOXD3-204ENST00000459979 NEFLP07196 543 aa21.77■■□□□ 1.08
HOXD3-204ENST00000459979 FCER1AP12319 257 aa21.77■■□□□ 1.08
HOXD3-204ENST00000459979 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.77■■□□□ 1.08
HOXD3-204ENST00000459979 IQCA1Q86XH1 822 aa21.77■■□□□ 1.08
HOXD3-204ENST00000459979 MAP4K1Q92918 833 aa21.77■■□□□ 1.08
HOXD3-204ENST00000459979 KIFC2Q96AC6 838 aa21.77■■□□□ 1.08
HOXD3-204ENST00000459979 LBHD1Q9BQE6 289 aaPredicted RBP21.77■■□□□ 1.08
HOXD3-204ENST00000459979 ATP11BQ9Y2G3 1177 aa21.77■■□□□ 1.08
HOXD3-204ENST00000459979 BTNL9Q6UXG8 535 aa21.76■■□□□ 1.07
HOXD3-204ENST00000459979 SLC5A4Q9NY91 659 aa21.76■■□□□ 1.07
HOXD3-204ENST00000459979 ZSWIM5Q9P217 1185 aa21.76■■□□□ 1.07
HOXD3-204ENST00000459979 B4E1Z4 1266 aa21.75■■□□□ 1.07
HOXD3-204ENST00000459979 SNHG28P0DPA3 235 aa21.75■■□□□ 1.07
HOXD3-204ENST00000459979 SNRNP48Q6IEG0 339 aaKnown RBP21.75■■□□□ 1.07
HOXD3-204ENST00000459979 KCTD1Q719H9 257 aa21.75■■□□□ 1.07
HOXD3-204ENST00000459979 SKAP1Q86WV1 359 aa21.75■■□□□ 1.07
HOXD3-204ENST00000459979 STXBP5LQ9Y2K9 1186 aa21.75■■□□□ 1.07
HOXD3-204ENST00000459979 KBTBD13C9JR72 458 aa21.74■■□□□ 1.07
HOXD3-204ENST00000459979 SEPT4O43236 478 aa21.74■■□□□ 1.07
HOXD3-204ENST00000459979 CYP21A2P08686 494 aa21.74■■□□□ 1.07
HOXD3-204ENST00000459979 KCTD2Q14681 263 aa21.74■■□□□ 1.07
HOXD3-204ENST00000459979 ERICH6BQ5W0A0 696 aa21.74■■□□□ 1.07
HOXD3-204ENST00000459979 ARRDC4Q8NCT1 418 aa21.74■■□□□ 1.07
HOXD3-204ENST00000459979 MAML3Q96JK9 1138 aa21.74■■□□□ 1.07
HOXD3-204ENST00000459979 ZSCAN10Q96SZ4 725 aaPredicted RBP21.74■■□□□ 1.07
HOXD3-204ENST00000459979 MMP19Q99542 508 aa21.74■■□□□ 1.07
HOXD3-204ENST00000459979 PRKAG2Q9UGJ0 569 aa21.74■■□□□ 1.07
HOXD3-204ENST00000459979 DIS3Q9Y2L1 958 aaKnown RBP21.74■■□□□ 1.07
HOXD3-204ENST00000459979 RIPK3Q9Y572 518 aa21.74■■□□□ 1.07
HOXD3-204ENST00000459979 CTDP1Q9Y5B0 961 aaPredicted RBP21.74■■□□□ 1.07
HOXD3-204ENST00000459979 PDHBP11177 359 aa21.73■■□□□ 1.07
HOXD3-204ENST00000459979 TRIM60Q495X7 471 aa21.73■■□□□ 1.07
HOXD3-204ENST00000459979 SLC39A5Q6ZMH5 540 aa21.73■■□□□ 1.07
HOXD3-204ENST00000459979 CPXCR1Q8N123 301 aa21.73■■□□□ 1.07
HOXD3-204ENST00000459979 FERMT2Q96AC1 680 aa21.73■■□□□ 1.07
HOXD3-204ENST00000459979 FAM161BQ96MY7 647 aa21.73■■□□□ 1.07
HOXD3-204ENST00000459979 ZKSCAN3Q9BRR0 538 aa21.73■■□□□ 1.07
HOXD3-204ENST00000459979 ESYT1Q9BSJ8 1104 aa21.73■■□□□ 1.07
HOXD3-204ENST00000459979 RAVER2Q9HCJ3 691 aaKnown RBP21.73■■□□□ 1.07
HOXD3-204ENST00000459979 PRDM5Q9NQX1 630 aaPredicted RBP21.73■■□□□ 1.07
HOXD3-204ENST00000459979 PRR12Q9ULL5 1215 aa21.73■■□□□ 1.07
HOXD3-204ENST00000459979 PGK2P07205 417 aa21.72■■□□□ 1.07
HOXD3-204ENST00000459979 RASGRP2Q7LDG7 609 aa21.72■■□□□ 1.07
HOXD3-204ENST00000459979 ENAHQ8N8S7 591 aaPredicted RBP21.72■■□□□ 1.07
HOXD3-204ENST00000459979 CHST13Q8NET6 341 aa21.72■■□□□ 1.07
HOXD3-204ENST00000459979 FBXO40Q9UH90 709 aa21.72■■□□□ 1.07
HOXD3-204ENST00000459979 ZNF536O15090 1300 aa21.72■■□□□ 1.07
HOXD3-204ENST00000459979 ADCYAP1R1P41586 468 aa21.71■■□□□ 1.07
HOXD3-204ENST00000459979 ZNF543Q08ER8 600 aa21.71■■□□□ 1.07
HOXD3-204ENST00000459979 TRDNQ13061 729 aa21.71■■□□□ 1.07
HOXD3-204ENST00000459979 IKQ13123 557 aaPredicted RBP21.71■■□□□ 1.07
HOXD3-204ENST00000459979 LRRC41Q15345 812 aa21.71■■□□□ 1.07
HOXD3-204ENST00000459979 CCDC96Q2M329 555 aa21.71■■□□□ 1.07
HOXD3-204ENST00000459979 ZNF792Q3KQV3 632 aa21.71■■□□□ 1.07
HOXD3-204ENST00000459979 KIAA1211Q6ZU35 1233 aa21.71■■□□□ 1.07
HOXD3-204ENST00000459979 LSG1Q9H089 658 aaKnown RBP21.71■■□□□ 1.07
HOXD3-204ENST00000459979 ISY1Q9ULR0 285 aaKnown RBP21.71■■□□□ 1.07
HOXD3-204ENST00000459979 DNAJC25-GNG10A0A024R161 153 aa21.7■■□□□ 1.06
HOXD3-204ENST00000459979 CENPBP07199 599 aaPredicted RBP21.7■■□□□ 1.06
HOXD3-204ENST00000459979 TKFCQ3LXA3 575 aa21.7■■□□□ 1.06
HOXD3-204ENST00000459979 PNMA1Q8ND90 353 aa21.7■■□□□ 1.06
HOXD3-204ENST00000459979 RANBP17Q9H2T7 1088 aaKnown RBP21.7■■□□□ 1.06
HOXD3-204ENST00000459979 RBM8AQ9Y5S9 174 aaKnown RBP21.7■■□□□ 1.06
HOXD3-204ENST00000459979 TNKSO95271 1327 aa21.7■■□□□ 1.06
HOXD3-204ENST00000459979 TAL1P17542 331 aaPredicted RBP21.69■■□□□ 1.06
HOXD3-204ENST00000459979 SHHQ15465 462 aa21.69■■□□□ 1.06
HOXD3-204ENST00000459979 C9orf50Q5SZB4 431 aa21.69■■□□□ 1.06
HOXD3-204ENST00000459979 GPATCH4Q5T3I0 446 aaKnown RBP21.69■■□□□ 1.06
HOXD3-204ENST00000459979 TTBK2Q6IQ55 1244 aa21.69■■□□□ 1.06
HOXD3-204ENST00000459979 SH3RF1Q7Z6J0 888 aa21.69■■□□□ 1.06
HOXD3-204ENST00000459979 CHMP4CQ96CF2 233 aa21.69■■□□□ 1.06
HOXD3-204ENST00000459979 GUCD1Q96NT3 240 aa21.69■■□□□ 1.06
HOXD3-204ENST00000459979 UBAC1Q9BSL1 405 aa21.69■■□□□ 1.06
HOXD3-204ENST00000459979 NRBP1Q9UHY1 535 aa21.69■■□□□ 1.06
HOXD3-204ENST00000459979 MTMR7Q9Y216 660 aa21.69■■□□□ 1.06
HOXD3-204ENST00000459979 E7EWF7 191 aa21.68■■□□□ 1.06
HOXD3-204ENST00000459979 POTEB2H3BUK9 544 aa21.68■■□□□ 1.06
HOXD3-204ENST00000459979 SNX17Q15036 470 aa21.68■■□□□ 1.06
HOXD3-204ENST00000459979 SEC23AQ15436 765 aa21.68■■□□□ 1.06
HOXD3-204ENST00000459979 SYDE2Q5VT97 1194 aa21.68■■□□□ 1.06
HOXD3-204ENST00000459979 CYB5R4Q7L1T6 521 aa21.68■■□□□ 1.06
HOXD3-204ENST00000459979 MSL3Q8N5Y2 521 aaKnown RBP21.68■■□□□ 1.06
HOXD3-204ENST00000459979 BADQ92934 168 aa21.68■■□□□ 1.06
HOXD3-204ENST00000459979 LENG1Q96BZ8 264 aaPredicted RBP21.68■■□□□ 1.06
HOXD3-204ENST00000459979 KAT14Q9H8E8 782 aa21.68■■□□□ 1.06
HOXD3-204ENST00000459979 PDLIM7Q9NR12 457 aa21.68■■□□□ 1.06
HOXD3-204ENST00000459979 TAF6LQ9Y6J9 622 aa21.68■■□□□ 1.06
HOXD3-204ENST00000459979 MCM3APO60318 1980 aa21.68■■□□□ 1.06
HOXD3-204ENST00000459979 FRMPD2Q68DX3 1309 aaPredicted RBP21.67■■□□□ 1.06
HOXD3-204ENST00000459979 PGK1P00558 417 aa21.67■■□□□ 1.06
HOXD3-204ENST00000459979 ICAM1P05362 532 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms