RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 JMJD4Q9H9V9 463 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 AFG3L2Q9Y4W6 797 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 MYH4Q9Y623 1939 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 PRPF3O43395 683 aaKnown RBP11.9□□□□□ -0.5
USP39-210ENST00000459775 PEX10O60683 326 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 PPP1R11O60927 126 aaPredicted RBP11.9□□□□□ -0.5
USP39-210ENST00000459775 CDKL5O76039 1030 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 ERCC3P19447 782 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 RGMBQ6NW40 437 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 TRIM22Q8IYM9 498 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 TNPO1Q92973 898 aaKnown RBP11.9□□□□□ -0.5
USP39-210ENST00000459775 MAP3K14Q99558 947 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.9□□□□□ -0.59e-9■■■■■ 111.8
USP39-210ENST00000459775 PPME1Q9Y570 386 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 ATAD5Q96QE3 1844 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 BACE1P56817 501 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 HUNKP57058 714 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 ASPRV1Q53RT3 343 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 NOL9Q5SY16 702 aaKnown RBP11.89□□□□□ -0.51
USP39-210ENST00000459775 LDLRAD1Q5T700 205 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 MCTP1Q6DN14 999 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 ARMC9Q7Z3E5 817 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 CTU1Q7Z7A3 348 aaKnown RBP11.89□□□□□ -0.51
USP39-210ENST00000459775 SDR16C5Q8N3Y7 309 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 KIFC2Q96AC6 838 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 GMCL1Q96IK5 515 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 C8orf76Q96K31 380 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 WDR18Q9BV38 432 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 KIAA1683Q9H0B3 1180 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 GBA2Q9HCG7 927 aaPredicted RBP11.89□□□□□ -0.51
USP39-210ENST00000459775 GOPCQ9HD26 462 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 KIF28PB7ZC32 967 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 H3BQV1 296 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 VCAM1P19320 739 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 AKAP17AQ02040 695 aaKnown RBP11.89□□□□□ -0.51
USP39-210ENST00000459775 PPP2R5BQ15173 497 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 NOM1Q5C9Z4 860 aaKnown RBP11.89□□□□□ -0.51
USP39-210ENST00000459775 KRT40Q6A162 431 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 WWC2Q6AWC2 1192 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 HEATR3Q7Z4Q2 680 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 APBB1IPQ7Z5R6 666 aaPredicted RBP11.89□□□□□ -0.51
USP39-210ENST00000459775 C2orf69Q8N8R5 385 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 OXER1Q8TDS5 423 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 DCAF4Q8WV16 495 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 COA7Q96BR5 231 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 OPTNQ96CV9 577 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 WNK4Q96J92 1243 aa11.89□□□□□ -0.51
USP39-210ENST00000459775 RNF26Q9BY78 433 aaPredicted RBP11.89□□□□□ -0.51
USP39-210ENST00000459775 DEXIO95424 95 aa11.88□□□□□ -0.51
USP39-210ENST00000459775 ZSCAN22P10073 491 aaPredicted RBP11.88□□□□□ -0.51
USP39-210ENST00000459775 MAP3K11Q16584 847 aa11.88□□□□□ -0.51
USP39-210ENST00000459775 TREML2Q5T2D2 321 aa11.88□□□□□ -0.51
USP39-210ENST00000459775 FBXO18Q8NFZ0 1043 aa11.88□□□□□ -0.51
USP39-210ENST00000459775 TANGO6Q9C0B7 1094 aa11.88□□□□□ -0.51
USP39-210ENST00000459775 RPAP3Q9H6T3 665 aaPredicted RBP11.88□□□□□ -0.51
USP39-210ENST00000459775 RIOX1Q9H6W3 641 aa11.88□□□□□ -0.51
USP39-210ENST00000459775 OTOFQ9HC10 1997 aa11.88□□□□□ -0.51
USP39-210ENST00000459775 SCG2P13521 617 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 GNAQP50148 359 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 PFKFB3Q16875 520 aaPredicted RBP11.87□□□□□ -0.51
USP39-210ENST00000459775 PPP4R3BQ5MIZ7 849 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 OTUD6BQ8N6M0 293 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 SLC10A4Q96EP9 437 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 SPZ1Q9BXG8 430 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 PRR12Q9ULL5 1215 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 CIZ1Q9ULV3 898 aaPredicted RBP11.87□□□□□ -0.51
USP39-210ENST00000459775 DOCK1Q14185 1865 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 STK36Q9NRP7 1315 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 GPATCH4Q5T3I0 446 aaKnown RBP11.87□□□□□ -0.51
USP39-210ENST00000459775 SYDE2Q5VT97 1194 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 CCDC174Q6PII3 467 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 ERO1BQ86YB8 467 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 RRP36Q96EU6 259 aaKnown RBP11.87□□□□□ -0.51
USP39-210ENST00000459775 SH2D4AQ9H788 454 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 AS3MTQ9HBK9 375 aa11.87□□□□□ -0.51
USP39-210ENST00000459775 RBM27Q9P2N5 1060 aaKnown RBP11.87□□□□□ -0.51
USP39-210ENST00000459775 CASP8AP2Q9UKL3 1982 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 FAM205CA6NFA0 338 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 SPDYE5A6NIY4 337 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 FAM155AB1AL88 458 aaPredicted RBP11.86□□□□□ -0.51
USP39-210ENST00000459775 BTBD18B2RXH4 712 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 NRDCO43847 1150 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 F13A1P00488 732 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 NUCB2P80303 420 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 NR5A1Q13285 461 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 QRICH1Q2TAL8 776 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 USH1GQ495M9 461 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 RASGRP4Q8TDF6 673 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 FTOQ9C0B1 505 aaKnown RBP eCLIP11.86□□□□□ -0.51
USP39-210ENST00000459775 PAPPA2Q9BXP8 1791 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 STXBP3O00186 592 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 FLOT1O75955 427 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 PDCP20941 246 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 STAT2P52630 851 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 SOX10P56693 466 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 NPY5RQ15761 445 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 CDC37Q16543 378 aaPredicted RBP11.86□□□□□ -0.51
USP39-210ENST00000459775 EARS2Q5JPH6 523 aaKnown RBP11.86□□□□□ -0.51
USP39-210ENST00000459775 GADL1Q6ZQY3 521 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 LZTS2Q9BRK4 669 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms