RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 ZNF543Q08ER8 600 aa14.96□□□□□ -0.01
PRPF40A-203ENST00000448428 SYDE2Q5VT97 1194 aa14.96□□□□□ -0.01
PRPF40A-203ENST00000448428 CCDC174Q6PII3 467 aa14.96□□□□□ -0.01
PRPF40A-203ENST00000448428 KIAA1211Q6ZU35 1233 aa14.96□□□□□ -0.01
PRPF40A-203ENST00000448428 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.96□□□□□ -0.01
PRPF40A-203ENST00000448428 ANKLE1Q8NAG6 615 aa14.96□□□□□ -0.01
PRPF40A-203ENST00000448428 PNMA1Q8ND90 353 aa14.96□□□□□ -0.01
PRPF40A-203ENST00000448428 HOMER2Q9NSB8 354 aa14.96□□□□□ -0.01
PRPF40A-203ENST00000448428 FBXO40Q9UH90 709 aa14.96□□□□□ -0.01
PRPF40A-203ENST00000448428 RBM8AQ9Y5S9 174 aaKnown RBP14.96□□□□□ -0.01
PRPF40A-203ENST00000448428 TNKSO95271 1327 aa14.95□□□□□ -0.02
PRPF40A-203ENST00000448428 E7EWF7 191 aa14.95□□□□□ -0.02
PRPF40A-203ENST00000448428 ANKRD35Q8N283 1001 aa14.95□□□□□ -0.02
PRPF40A-203ENST00000448428 DIS3LQ8TF46 1054 aaKnown RBP14.95□□□□□ -0.02
PRPF40A-203ENST00000448428 TRERF1Q96PN7 1200 aa14.95□□□□□ -0.02
PRPF40A-203ENST00000448428 TINF2Q9BSI4 451 aa14.95□□□□□ -0.02
PRPF40A-203ENST00000448428 UBAC1Q9BSL1 405 aa14.95□□□□□ -0.02
PRPF40A-203ENST00000448428 LSG1Q9H089 658 aaKnown RBP14.95□□□□□ -0.02
PRPF40A-203ENST00000448428 RANBP17Q9H2T7 1088 aaKnown RBP14.95□□□□□ -0.02
PRPF40A-203ENST00000448428 KAT14Q9H8E8 782 aa14.95□□□□□ -0.02
PRPF40A-203ENST00000448428 DDX20Q9UHI6 824 aaKnown RBP14.95□□□□□ -0.02
PRPF40A-203ENST00000448428 GOLGA8HP0CJ92 632 aa14.94□□□□□ -0.02
PRPF40A-203ENST00000448428 ALAS1P13196 640 aa14.94□□□□□ -0.02
PRPF40A-203ENST00000448428 TRDNQ13061 729 aa14.94□□□□□ -0.02
PRPF40A-203ENST00000448428 SEC23AQ15436 765 aa14.94□□□□□ -0.02
PRPF40A-203ENST00000448428 TKFCQ3LXA3 575 aa14.94□□□□□ -0.02
PRPF40A-203ENST00000448428 PRPF38BQ5VTL8 546 aaKnown RBP14.94□□□□□ -0.02
PRPF40A-203ENST00000448428 STOX1Q6ZVD7 989 aa14.94□□□□□ -0.02
PRPF40A-203ENST00000448428 NECAB2Q7Z6G3 386 aa14.94□□□□□ -0.02
PRPF40A-203ENST00000448428 ACAD9Q9H845 621 aa14.94□□□□□ -0.02
PRPF40A-203ENST00000448428 RNF146Q9NTX7 359 aa14.94□□□□□ -0.02
PRPF40A-203ENST00000448428 MCM3APO60318 1980 aa14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 SEPT4O43236 478 aa14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 ICAM1P05362 532 aa14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 TAL1P17542 331 aaPredicted RBP14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 MUM1L1Q5H9M0 696 aa14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 GPATCH4Q5T3I0 446 aaKnown RBP14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 IFIT1BQ5T764 474 aaKnown RBP14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 NCOA7Q8NI08 942 aa14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 DPF3Q92784 378 aa14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 HTATIP2Q9BUP3 242 aa14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 CPVLQ9H3G5 476 aa14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 CCPG1Q9ULG6 757 aa14.93□□□□□ -0.02
PRPF40A-203ENST00000448428 ALPK3Q96L96 1907 aa14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 MSCO60682 206 aa14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 SNAI1O95863 264 aaPredicted RBP14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 CNTN2Q02246 1040 aa14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 NECTIN1Q15223 517 aa14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 ANO1Q5XXA6 986 aa14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 MAMDC4Q6UXC1 1216 aa14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 CHST3Q7LGC8 479 aa14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 RALYLQ86SE5 291 aaKnown RBP14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 MSL3Q8N5Y2 521 aaKnown RBP14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 FGD4Q96M96 766 aa14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 UBA5Q9GZZ9 404 aa14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 A1CFQ9NQ94 594 aaKnown RBP14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 NRBP1Q9UHY1 535 aa14.92□□□□□ -0.02
PRPF40A-203ENST00000448428 IFIT3O14879 490 aaKnown RBP14.91□□□□□ -0.02
PRPF40A-203ENST00000448428 ZNF467Q7Z7K2 595 aaPredicted RBP14.91□□□□□ -0.02
PRPF40A-203ENST00000448428 FAM133AQ8N9E0 248 aa14.91□□□□□ -0.02
PRPF40A-203ENST00000448428 C11orf49Q9H6J7 331 aa14.91□□□□□ -0.02
PRPF40A-203ENST00000448428 SENP2Q9HC62 589 aa14.91□□□□□ -0.02
PRPF40A-203ENST00000448428 ANO2Q9NQ90 1003 aa14.91□□□□□ -0.02
PRPF40A-203ENST00000448428 MYH6P13533 1939 aa14.91□□□□□ -0.02
PRPF40A-203ENST00000448428 SOWAHBA6NEL2 793 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 H0YGN5 161 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 POTEB2H3BUK9 544 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 SLC27A2O14975 620 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 CDC45O75419 566 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 PARP1P09874 1014 aaKnown RBP14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 ZNF865P0CJ78 1059 aaPredicted RBP14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 COL6A1P12109 1028 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 ANTXR2P58335 489 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 ASPRV1Q53RT3 343 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 CREB3L3Q68CJ9 461 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 MB21D2Q8IYB1 491 aaPredicted RBP14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 STAG2Q8N3U4 1231 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 IGDCC4Q8TDY8 1250 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 CNPY2Q9Y2B0 182 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 LCTP09848 1927 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 PFASO15067 1338 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 SYNGAP1Q96PV0 1343 aa14.9□□□□□ -0.02
PRPF40A-203ENST00000448428 ERICH2A1L162 156 aa14.89□□□□□ -0.03
PRPF40A-203ENST00000448428 NSMFQ6X4W1 530 aa14.89□□□□□ -0.03
PRPF40A-203ENST00000448428 ADGRF4Q8IZF3 695 aa14.89□□□□□ -0.03
PRPF40A-203ENST00000448428 CLEC4DQ8WXI8 215 aa14.89□□□□□ -0.03
PRPF40A-203ENST00000448428 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.89□□□□□ -0.03
PRPF40A-203ENST00000448428 CYP39A1Q9NYL5 469 aa14.89□□□□□ -0.03
PRPF40A-203ENST00000448428 NFIBO00712 420 aa14.88□□□□□ -0.03
PRPF40A-203ENST00000448428 EVI5O60447 810 aa14.88□□□□□ -0.03
PRPF40A-203ENST00000448428 CENPBP07199 599 aaPredicted RBP14.88□□□□□ -0.03
PRPF40A-203ENST00000448428 BAATQ14032 418 aaPredicted RBP14.88□□□□□ -0.03
PRPF40A-203ENST00000448428 COL9A3Q14050 684 aaPredicted RBP14.88□□□□□ -0.03
PRPF40A-203ENST00000448428 WTAPQ15007 396 aa14.88□□□□□ -0.03
PRPF40A-203ENST00000448428 TMEM67Q5HYA8 995 aa14.88□□□□□ -0.03
PRPF40A-203ENST00000448428 GJC2Q5T442 439 aaPredicted RBP14.88□□□□□ -0.03
PRPF40A-203ENST00000448428 CASC1Q6TDU7 716 aa14.88□□□□□ -0.03
PRPF40A-203ENST00000448428 ARMCX2Q7L311 632 aa14.88□□□□□ -0.03
PRPF40A-203ENST00000448428 CCDC144CPQ8IYA2 1237 aa14.88□□□□□ -0.03
PRPF40A-203ENST00000448428 ARRDC4Q8NCT1 418 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 307.7 ms