RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 A0A1W2PPC1 479 aa24.5■■□□□ 1.51
SDC1-205ENST00000447124 TOP1P11387 765 aaKnown RBP24.5■■□□□ 1.51
SDC1-205ENST00000447124 ADCYAP1R1P41586 468 aa24.5■■□□□ 1.51
SDC1-205ENST00000447124 IKQ13123 557 aaPredicted RBP24.5■■□□□ 1.51
SDC1-205ENST00000447124 MFSD6Q6ZSS7 791 aa24.5■■□□□ 1.51
SDC1-205ENST00000447124 ZNF467Q7Z7K2 595 aaPredicted RBP24.5■■□□□ 1.51
SDC1-205ENST00000447124 LENG1Q96BZ8 264 aaPredicted RBP24.5■■□□□ 1.51
SDC1-205ENST00000447124 SZT2Q5T011 3432 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 KBTBD13C9JR72 458 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 PGK1P00558 417 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 RARBP10826 455 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 MFAP1P55081 439 aaKnown RBP24.49■■□□□ 1.51
SDC1-205ENST00000447124 RTP1P59025 263 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 CNTN2Q02246 1040 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 CCDC174Q6PII3 467 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 DCAF4Q8WV16 495 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 FERMT2Q96AC1 680 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 XPNPEP3Q9NQH7 507 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 DIAPH3Q9NSV4 1193 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 CNPY2Q9Y2B0 182 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 SYNGAP1Q96PV0 1343 aa24.49■■□□□ 1.51
SDC1-205ENST00000447124 SOX1O00570 391 aaPredicted RBP24.48■■□□□ 1.51
SDC1-205ENST00000447124 AKR1A1P14550 325 aa24.48■■□□□ 1.51
SDC1-205ENST00000447124 SLC16A2P36021 539 aa24.48■■□□□ 1.51
SDC1-205ENST00000447124 BTNL9Q6UXG8 535 aa24.48■■□□□ 1.51
SDC1-205ENST00000447124 TRERF1Q96PN7 1200 aa24.48■■□□□ 1.51
SDC1-205ENST00000447124 IL25Q9H293 177 aa24.48■■□□□ 1.51
SDC1-205ENST00000447124 ACAD9Q9H845 621 aa24.48■■□□□ 1.51
SDC1-205ENST00000447124 A1CFQ9NQ94 594 aaKnown RBP24.48■■□□□ 1.51
SDC1-205ENST00000447124 RNF146Q9NTX7 359 aa24.48■■□□□ 1.51
SDC1-205ENST00000447124 ZNF213O14771 459 aa24.47■■□□□ 1.51
SDC1-205ENST00000447124 PCP11498 1178 aaKnown RBP24.47■■□□□ 1.51
SDC1-205ENST00000447124 ALAS1P13196 640 aa24.47■■□□□ 1.51
SDC1-205ENST00000447124 CCDC96Q2M329 555 aa24.47■■□□□ 1.51
SDC1-205ENST00000447124 FAM133AQ8N9E0 248 aa24.47■■□□□ 1.51
SDC1-205ENST00000447124 TTC14Q96N46 770 aa24.47■■□□□ 1.51
SDC1-205ENST00000447124 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.47■■□□□ 1.51
SDC1-205ENST00000447124 NEDD4P46934 1319 aa24.46■■□□□ 1.51
SDC1-205ENST00000447124 SOWAHBA6NEL2 793 aa24.46■■□□□ 1.51
SDC1-205ENST00000447124 HIP1O00291 1037 aa24.46■■□□□ 1.51
SDC1-205ENST00000447124 GSPT1P15170 499 aaKnown RBP24.46■■□□□ 1.51
SDC1-205ENST00000447124 ACVR2BQ13705 512 aa24.46■■□□□ 1.51
SDC1-205ENST00000447124 TKFCQ3LXA3 575 aa24.46■■□□□ 1.51
SDC1-205ENST00000447124 MUM1L1Q5H9M0 696 aa24.46■■□□□ 1.51
SDC1-205ENST00000447124 GPCPD1Q9NPB8 672 aa24.46■■□□□ 1.51
SDC1-205ENST00000447124 ZHX1Q9UKY1 873 aaPredicted RBP24.46■■□□□ 1.51
SDC1-205ENST00000447124 FAM184BQ9ULE4 1060 aa24.46■■□□□ 1.51
SDC1-205ENST00000447124 PHF24Q9UPV7 400 aa24.46■■□□□ 1.51
SDC1-205ENST00000447124 FRMPD2Q68DX3 1309 aaPredicted RBP24.45■■□□□ 1.5
SDC1-205ENST00000447124 ADAMTS4O75173 837 aa24.45■■□□□ 1.5
SDC1-205ENST00000447124 MDM2Q00987 491 aaPredicted RBP24.45■■□□□ 1.5
SDC1-205ENST00000447124 SNX17Q15036 470 aa24.45■■□□□ 1.5
SDC1-205ENST00000447124 ARMCX2Q7L311 632 aa24.45■■□□□ 1.5
SDC1-205ENST00000447124 ZKSCAN3Q9BRR0 538 aa24.45■■□□□ 1.5
SDC1-205ENST00000447124 KATNBL1Q9H079 304 aa24.45■■□□□ 1.5
SDC1-205ENST00000447124 RANBP17Q9H2T7 1088 aaKnown RBP24.45■■□□□ 1.5
SDC1-205ENST00000447124 RNF41Q9H4P4 317 aaPredicted RBP24.45■■□□□ 1.5
SDC1-205ENST00000447124 ATP11BQ9Y2G3 1177 aa24.45■■□□□ 1.5
SDC1-205ENST00000447124 POTEB2H3BUK9 544 aa24.44■■□□□ 1.5
SDC1-205ENST00000447124 ADCY6O43306 1168 aa24.44■■□□□ 1.5
SDC1-205ENST00000447124 PDHBP11177 359 aa24.44■■□□□ 1.5
SDC1-205ENST00000447124 IRX5P78411 483 aaPredicted RBP24.44■■□□□ 1.5
SDC1-205ENST00000447124 TTC22Q5TAA0 569 aa24.44■■□□□ 1.5
SDC1-205ENST00000447124 SYDE2Q5VT97 1194 aa24.44■■□□□ 1.5
SDC1-205ENST00000447124 CCDC144CPQ8IYA2 1237 aa24.44■■□□□ 1.5
SDC1-205ENST00000447124 LRCH3Q96II8 777 aa24.44■■□□□ 1.5
SDC1-205ENST00000447124 DSCC1Q9BVC3 393 aa24.44■■□□□ 1.5
SDC1-205ENST00000447124 UBE2OQ9C0C9 1292 aaKnown RBP24.44■■□□□ 1.5
SDC1-205ENST00000447124 TRIM60Q495X7 471 aa24.43■■□□□ 1.5
SDC1-205ENST00000447124 RNF180Q86T96 592 aa24.43■■□□□ 1.5
SDC1-205ENST00000447124 KLHDC9Q8NEP7 349 aa24.43■■□□□ 1.5
SDC1-205ENST00000447124 ESR2Q92731 530 aa24.43■■□□□ 1.5
SDC1-205ENST00000447124 ABHD16BQ9H3Z7 469 aa24.43■■□□□ 1.5
SDC1-205ENST00000447124 DDX49Q9Y6V7 483 aaKnown RBP24.43■■□□□ 1.5
SDC1-205ENST00000447124 LAMA3Q16787 3333 aa24.42■■□□□ 1.5
SDC1-205ENST00000447124 ASTN1O14525 1302 aa24.42■■□□□ 1.5
SDC1-205ENST00000447124 MCM3APO60318 1980 aa24.42■■□□□ 1.5
SDC1-205ENST00000447124 ICAM1P05362 532 aa24.42■■□□□ 1.5
SDC1-205ENST00000447124 SNHG28P0DPA3 235 aa24.42■■□□□ 1.5
SDC1-205ENST00000447124 CCDC144BQ3MJ40 725 aa24.42■■□□□ 1.5
SDC1-205ENST00000447124 C1orf53Q5VUE5 145 aa24.42■■□□□ 1.5
SDC1-205ENST00000447124 CCSAPQ6IQ19 270 aaPredicted RBP24.42■■□□□ 1.5
SDC1-205ENST00000447124 PURBQ96QR8 312 aaKnown RBP24.42■■□□□ 1.5
SDC1-205ENST00000447124 CYP39A1Q9NYL5 469 aa24.42■■□□□ 1.5
SDC1-205ENST00000447124 CCPG1Q9ULG6 757 aa24.42■■□□□ 1.5
SDC1-205ENST00000447124 MYADML2A6NDP7 307 aa24.41■■□□□ 1.5
SDC1-205ENST00000447124 KDM4AO75164 1064 aa24.41■■□□□ 1.5
SDC1-205ENST00000447124 DUSP11O75319 330 aaKnown RBP24.41■■□□□ 1.5
SDC1-205ENST00000447124 ZNF543Q08ER8 600 aa24.41■■□□□ 1.5
SDC1-205ENST00000447124 SH3RF1Q7Z6J0 888 aa24.41■■□□□ 1.5
SDC1-205ENST00000447124 DGKHQ86XP1 1220 aa24.41■■□□□ 1.5
SDC1-205ENST00000447124 SYNRGQ9UMZ2 1314 aa24.4■■□□□ 1.5
SDC1-205ENST00000447124 B4E1Z4 1266 aa24.4■■□□□ 1.5
SDC1-205ENST00000447124 TLE2Q04725 743 aa24.4■■□□□ 1.5
SDC1-205ENST00000447124 TDHQ8IZJ6 230 aa24.4■■□□□ 1.5
SDC1-205ENST00000447124 ANKS1AQ92625 1134 aa24.4■■□□□ 1.5
SDC1-205ENST00000447124 TSEN34Q9BSV6 310 aaKnown RBP24.4■■□□□ 1.5
SDC1-205ENST00000447124 ZSWIM5Q9P217 1185 aa24.4■■□□□ 1.5
SDC1-205ENST00000447124 A0A1W2PQ45 241 aaPredicted RBP24.39■■□□□ 1.49
SDC1-205ENST00000447124 A0A1W2PQY0 241 aa24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms