RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 TRIM68Q6AZZ1 485 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CCDC70Q6NSX1 233 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 GPIHBP1Q8IV16 184 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 AMOTL1Q8IY63 956 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 NSMCE1Q8WV22 266 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CUL5Q93034 780 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CNKSR1Q969H4 720 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 ABTB1Q969K4 478 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 ZNF496Q96IT1 587 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 RBM41Q96IZ5 413 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 PPP1R13BQ96KQ4 1090 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 GORASP1Q9BQQ3 440 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 PRR14Q9BWN1 585 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 IRX2Q9BZI1 471 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 L2HGDHQ9H9P8 463 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 DDX20Q9UHI6 824 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 BZW2Q9Y6E2 419 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 CACNA1HO95180 2353 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 CRB1P82279 1406 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 IQGAP1P46940 1657 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 TTC41PQ6P2S7 1318 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 ZNF541Q9H0D2 1346 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 VIRMAQ69YN4 1812 aaKnown RBP3.09□□□□□ -1.91
LIG4-203ENST00000442234 TCP10L2B9ZVM9 353 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 RBAK-RBAKDNI3L0D1 243 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 MEFVO15553 781 aaPredicted RBP3.09□□□□□ -1.91
LIG4-203ENST00000442234 AP5Z1O43299 807 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 PEX14O75381 377 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 PDHBP11177 359 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 NAT2P11245 290 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 GJA5P36382 358 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 FLT3P36888 993 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 IFT88Q13099 833 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 TMED1Q13445 227 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 CASP8Q14790 479 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 KIAA0753Q2KHM9 967 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 WASHC4Q2M389 1173 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 KIF4BQ2VIQ3 1234 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 PUS10Q3MIT2 529 aaKnown RBP3.09□□□□□ -1.91
LIG4-203ENST00000442234 CCDC144BQ3MJ40 725 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 SH2D4BQ5SQS7 431 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 ANGEL2Q5VTE6 544 aaKnown RBP3.09□□□□□ -1.91
LIG4-203ENST00000442234 SFMBT2Q5VUG0 894 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 MIGA2Q7L4E1 593 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 CCDC144CPQ8IYA2 1237 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 CCDC170Q8IYT3 715 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 RBM46Q8TBY0 533 aaKnown RBP3.09□□□□□ -1.91
LIG4-203ENST00000442234 TAF4BQ92750 862 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 MKL1Q969V6 931 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 SLC10A4Q96EP9 437 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 TAF1DQ9H5J8 278 aaPredicted RBP3.09□□□□□ -1.91
LIG4-203ENST00000442234 KCNQ5Q9NR82 932 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 ZNF318Q5VUA4 2279 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 ARHGEF5Q12774 1597 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 ASTN2O75129 1339 aaPredicted RBP3.09□□□□□ -1.91
LIG4-203ENST00000442234 ERICH2A1L162 156 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 SPDYE3A6NKU9 549 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 RTN2O75298 545 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 FESP07332 822 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 EN2P19622 333 aaPredicted RBP3.09□□□□□ -1.91
LIG4-203ENST00000442234 CDC25CP30307 473 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 GNAI1P63096 354 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 DEUP1Q05D60 604 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 RCN1Q15293 331 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 SLC9C1Q4G0N8 1177 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 TTC30AQ86WT1 665 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 PDILTQ8N807 584 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.09□□□□□ -1.91
LIG4-203ENST00000442234 TEKT4Q8WW24 435 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 SPATA17Q96L03 361 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 MPHOSPH6Q99547 160 aaKnown RBP3.09□□□□□ -1.91
LIG4-203ENST00000442234 UTP14AQ9BVJ6 771 aaKnown RBP3.09□□□□□ -1.91
LIG4-203ENST00000442234 PPP1R12CQ9BZL4 782 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 SLC40A1Q9NP59 571 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 CEP126Q9P2H0 1117 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 HCSTQ9UBK5 93 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 FAM198AQ9UFP1 575 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 TSPYL4Q9UJ04 414 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 ZNF652Q9Y2D9 606 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 ZDHHC9Q9Y397 364 aa3.09□□□□□ -1.91
LIG4-203ENST00000442234 NHSL1Q5SYE7 1610 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 NBASA2RRP1 2371 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 AGLP35573 1532 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 PHLPP2Q6ZVD8 1323 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 SOWAHBA6NEL2 793 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 WTIPA6NIX2 430 aaPredicted RBP3.09□□□□□ -1.92
LIG4-203ENST00000442234 RASSF10A6NK89 507 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 STK10O94804 968 aaKnown RBP3.09□□□□□ -1.92
LIG4-203ENST00000442234 FAM163BP0C2L3 166 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 EIF4BP23588 611 aaKnown RBP3.09□□□□□ -1.92
LIG4-203ENST00000442234 GCLCP48506 637 aaPredicted RBP3.09□□□□□ -1.92
LIG4-203ENST00000442234 PSMD7P51665 324 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 CLCN2P51788 898 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 SMTNP53814 917 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 PSMC1P62191 440 aaKnown RBP3.09□□□□□ -1.92
LIG4-203ENST00000442234 KRT85P78386 507 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 MDM2Q00987 491 aaPredicted RBP3.09□□□□□ -1.92
LIG4-203ENST00000442234 GUCY1B3Q02153 619 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 FAM160A1Q05DH4 1040 aa3.09□□□□□ -1.92
LIG4-203ENST00000442234 PPP1R7Q15435 360 aa3.09□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms