RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 CCDC178Q5BJE1 867 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 SLFN13Q68D06 897 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 TDHQ8IZJ6 230 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 NUP133Q8WUM0 1156 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 STAG1Q8WVM7 1258 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 FLRT1Q9NZU1 646 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 ISY1Q9ULR0 285 aaKnown RBP9.21□□□□□ -0.94
CD44-211ENST00000442151 ZMYND8Q9ULU4 1186 aaPredicted RBP9.21□□□□□ -0.94
CD44-211ENST00000442151 PCDHB15Q9Y5E8 787 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 SYNGAP1Q96PV0 1343 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 HIP1O00291 1037 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 IGHA2P01877 340 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 ZNF792Q3KQV3 632 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 LRIT3Q3SXY7 679 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 MCMDC2Q4G0Z9 681 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 C1orf53Q5VUE5 145 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 SNRNP48Q6IEG0 339 aaKnown RBP9.2□□□□□ -0.94
CD44-211ENST00000442151 SLC39A5Q6ZMH5 540 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.2□□□□□ -0.94
CD44-211ENST00000442151 ANKRD35Q8N283 1001 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 PI4K2BQ8TCG2 481 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 KIFC2Q96AC6 838 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 GMCL1Q96IK5 515 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 SEZ6LQ9BYH1 1024 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 ZNF236Q9UL36 1845 aa9.2□□□□□ -0.94
CD44-211ENST00000442151 IGKV6D-41A0A0C4DH26 115 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 B4DLN1 442 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 M0R2C6 588 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 SLC1A4P43007 532 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 STAT2P52630 851 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 MRPL12P52815 198 aaKnown RBP9.19□□□□□ -0.94
CD44-211ENST00000442151 KIAA1755Q5JYT7 1200 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 STK11IPQ8N1F8 1099 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 PCSK9Q8NBP7 692 aaKnown RBP9.19□□□□□ -0.94
CD44-211ENST00000442151 CEP95Q96GE4 821 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 MPHOSPH6Q99547 160 aaKnown RBP9.19□□□□□ -0.94
CD44-211ENST00000442151 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.19□□□□□ -0.94
CD44-211ENST00000442151 ABHD16BQ9H3Z7 469 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 RNF41Q9H4P4 317 aaPredicted RBP9.19□□□□□ -0.94
CD44-211ENST00000442151 SLC38A10Q9HBR0 1119 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 XPNPEP3Q9NQH7 507 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 FBXO28Q9NVF7 368 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 ANAPC4Q9UJX5 808 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 ZNF214Q9UL59 606 aaPredicted RBP9.19□□□□□ -0.94
CD44-211ENST00000442151 TACC3Q9Y6A5 838 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 PFASO15067 1338 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 BAZ2AQ9UIF9 1905 aaKnown RBP9.19□□□□□ -0.94
CD44-211ENST00000442151 ASB14A6NK59 587 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 MAGEA10P43363 369 aaPredicted RBP9.19□□□□□ -0.94
CD44-211ENST00000442151 SLC4A3P48751 1232 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 RTP1P59025 263 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 PLCB2Q00722 1185 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 LRRC26Q2I0M4 334 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 GJC2Q5T442 439 aaPredicted RBP9.19□□□□□ -0.94
CD44-211ENST00000442151 CCDC174Q6PII3 467 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 MAMDC4Q6UXC1 1216 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 CPXCR1Q8N123 301 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 TTC14Q96N46 770 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 PLIN4Q96Q06 1357 aa9.19□□□□□ -0.94
CD44-211ENST00000442151 MROH7Q68CQ1 1323 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 LOC102724159A0A0B4J2E5 919 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 MOXD2PA6NHM9 499 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 TRIM6-TRIM34B2RNG4 842 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 ZEB2O60315 1214 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 RANBP6O60518 1105 aaKnown RBP9.18□□□□□ -0.94
CD44-211ENST00000442151 SYN1P17600 705 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 PDE1AP54750 535 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 PWP2Q15269 919 aaKnown RBP9.18□□□□□ -0.94
CD44-211ENST00000442151 LRRC41Q15345 812 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 CLEC10AQ8IUN9 316 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 TRPV1Q8NER1 839 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 REPS2Q8NFH8 660 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 DCAF4Q8WV16 495 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 CRBNQ96SW2 442 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 ACAD9Q9H845 621 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 STX8Q9UNK0 236 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 PHF24Q9UPV7 400 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 ATP11BQ9Y2G3 1177 aa9.18□□□□□ -0.94
CD44-211ENST00000442151 CEP290O15078 2479 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 DCDC2CA8MYV0 355 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 TMEM232C9JQI7 657 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 ORC4O43929 436 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 DUSP11O75319 330 aaKnown RBP9.17□□□□□ -0.94
CD44-211ENST00000442151 PRDM1O75626 825 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 ADCYAP1R1P41586 468 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 PRAMEF19Q5SWL8 479 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 TSHZ3Q63HK5 1081 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 MAF1Q9H063 256 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 RAVER2Q9HCJ3 691 aaKnown RBP9.17□□□□□ -0.94
CD44-211ENST00000442151 EPB41L4AQ9HCS5 686 aaPredicted RBP9.17□□□□□ -0.94
CD44-211ENST00000442151 TOMM22Q9NS69 142 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 TCP11L1Q9NUJ3 509 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 DNAJC25-GNG10A0A024R161 153 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 C2orf72A6NCS6 295 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 TLR3O15455 904 aaKnown RBP9.17□□□□□ -0.94
CD44-211ENST00000442151 CHGBP05060 677 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 PGK2P07205 417 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 TOP1P11387 765 aaKnown RBP9.17□□□□□ -0.94
CD44-211ENST00000442151 ACVR2BQ13705 512 aa9.17□□□□□ -0.94
CD44-211ENST00000442151 SNX17Q15036 470 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms