RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 MMP19Q99542 508 aa9.28□□□□□ -0.92
VPS50-204ENST00000438395 ATP11BQ9Y2G3 1177 aa9.28□□□□□ -0.92
VPS50-204ENST00000438395 LAMA3Q16787 3333 aa9.28□□□□□ -0.92
VPS50-204ENST00000438395 MINDY4BA8MYZ0 360 aa9.27□□□□□ -0.93
VPS50-204ENST00000438395 GPR37O15354 613 aa9.27□□□□□ -0.93
VPS50-204ENST00000438395 SMARCA5O60264 1052 aaPredicted RBP9.27□□□□□ -0.93
VPS50-204ENST00000438395 ZFYP08048 801 aaPredicted RBP9.27□□□□□ -0.93
VPS50-204ENST00000438395 RARBP10826 455 aa9.27□□□□□ -0.93
VPS50-204ENST00000438395 EEF2P13639 858 aaKnown RBP9.27□□□□□ -0.93
VPS50-204ENST00000438395 DNAJB2P25686 324 aa9.27□□□□□ -0.93
VPS50-204ENST00000438395 RTP1P59025 263 aa9.27□□□□□ -0.93
VPS50-204ENST00000438395 COPS2P61201 443 aa9.27□□□□□ -0.93
VPS50-204ENST00000438395 LRIT3Q3SXY7 679 aa9.27□□□□□ -0.93
VPS50-204ENST00000438395 SLFNL1Q499Z3 407 aa9.27□□□□□ -0.93
VPS50-204ENST00000438395 FAM83BQ5T0W9 1011 aa9.27□□□□□ -0.93
VPS50-204ENST00000438395 GJC2Q5T442 439 aaPredicted RBP9.27□□□□□ -0.93
VPS50-204ENST00000438395 NACAP1Q9BZK3 213 aa9.27□□□□□ -0.93
VPS50-204ENST00000438395 PRDM5Q9NQX1 630 aaPredicted RBP9.27□□□□□ -0.93
VPS50-204ENST00000438395 CNPY2Q9Y2B0 182 aa9.27□□□□□ -0.93
VPS50-204ENST00000438395 MYO5AQ9Y4I1 1855 aaKnown RBP9.27□□□□□ -0.93
VPS50-204ENST00000438395 VWA5AO00534 786 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 ERC2O15083 957 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 COBLO75128 1261 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 SLC3A2P08195 630 aaKnown RBP9.26□□□□□ -0.93
VPS50-204ENST00000438395 GNAT2P19087 354 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 STAT3P40763 770 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 SLC4A3P48751 1232 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 TMEM132BQ14DG7 1078 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 ANO1Q5XXA6 986 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 SMYD5Q6GMV2 418 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 GIMAP6Q6P9H5 292 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 CTR9Q6PD62 1173 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 STK11IPQ8N1F8 1099 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 KBTBD3Q8NAB2 608 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 APPBP2Q92624 585 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 DDX11Q96FC9 970 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 MAML3Q96JK9 1138 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 SLF1Q9BQI6 1058 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 TEX13BQ9BXU2 312 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 PUS7LQ9H0K6 701 aaKnown RBP9.26□□□□□ -0.93
VPS50-204ENST00000438395 TMEM134Q9H6X4 195 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 XPNPEP3Q9NQH7 507 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 NRBP1Q9UHY1 535 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 PPP1R9AQ9ULJ8 1098 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 PLXNB2O15031 1838 aa9.26□□□□□ -0.93
VPS50-204ENST00000438395 SZT2Q5T011 3432 aa9.25□□□□□ -0.93
VPS50-204ENST00000438395 RNF113AO15541 343 aaKnown RBP9.25□□□□□ -0.93
VPS50-204ENST00000438395 HIC1Q14526 733 aa9.25□□□□□ -0.93
VPS50-204ENST00000438395 KIAA1755Q5JYT7 1200 aa9.25□□□□□ -0.93
VPS50-204ENST00000438395 C20orf194Q5TEA3 1177 aa9.25□□□□□ -0.93
VPS50-204ENST00000438395 RNF180Q86T96 592 aa9.25□□□□□ -0.93
VPS50-204ENST00000438395 RIOX2Q8IUF8 465 aa9.25□□□□□ -0.93
VPS50-204ENST00000438395 ZNF444Q8N0Y2 327 aaPredicted RBP9.25□□□□□ -0.93
VPS50-204ENST00000438395 TRPV1Q8NER1 839 aa9.25□□□□□ -0.93
VPS50-204ENST00000438395 NLRP7Q8WX94 980 aa9.25□□□□□ -0.93
VPS50-204ENST00000438395 STRBPQ96SI9 672 aaKnown RBP9.25□□□□□ -0.93
VPS50-204ENST00000438395 FBXO28Q9NVF7 368 aa9.25□□□□□ -0.93
VPS50-204ENST00000438395 GPAA1O43292 621 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 ZBED4O75132 1171 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 CHGBP05060 677 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 PGK2P07205 417 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 AKR1A1P14550 325 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 RASA1P20936 1047 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 ADCYAP1R1P41586 468 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 PDE4BQ07343 736 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 IKQ13123 557 aaPredicted RBP9.24□□□□□ -0.93
VPS50-204ENST00000438395 LRRC41Q15345 812 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 TRIM60Q495X7 471 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 SBK1Q52WX2 424 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 FAM47AQ5JRC9 791 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 PRAMEF19Q5SWL8 479 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 TSHZ3Q63HK5 1081 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 SNRNP48Q6IEG0 339 aaKnown RBP9.24□□□□□ -0.93
VPS50-204ENST00000438395 SIAH1Q8IUQ4 282 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 FERMT2Q96AC1 680 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 NUP88Q99567 741 aaPredicted RBP9.24□□□□□ -0.93
VPS50-204ENST00000438395 TINF2Q9BSI4 451 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 FSD1Q9BTV5 496 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 IL21Q9HBE4 155 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 NYAP2Q9P242 653 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 ZNF236Q9UL36 1845 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 ROBO3Q96MS0 1386 aa9.24□□□□□ -0.93
VPS50-204ENST00000438395 GSG1L2A8MUP6 293 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 F5H6K3 240 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 SMIM22K7EJ46 135 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 NDUFB10O96000 172 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 TSPY3P0CV98 308 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 TSPY8P0CW00 308 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 KLRC3Q07444 240 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 Q7L0L9 218 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 CPXCR1Q8N123 301 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 PRPF38AQ8NAV1 312 aaKnown RBP9.23□□□□□ -0.93
VPS50-204ENST00000438395 KIFC2Q96AC6 838 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 NAPBQ9H115 298 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 DCTPP1Q9H773 170 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 SPC25Q9HBM1 224 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 CLIP2Q9UDT6 1046 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 FBXO40Q9UH90 709 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 ZHX1Q9UKY1 873 aaPredicted RBP9.23□□□□□ -0.93
VPS50-204ENST00000438395 ZNF214Q9UL59 606 aaPredicted RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms