RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 HMGCRP04035 888 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 PGK2P07205 417 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 CCL5P13501 91 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 TSGA10IPQ3SY00 556 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 CATIPQ7Z7H3 387 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 STAG2Q8N3U4 1231 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 NUP133Q8WUM0 1156 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 TMEM87BQ96K49 555 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 TCEANC2Q96MN5 208 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 UNC93B1Q9H1C4 597 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 RANBP17Q9H2T7 1088 aaKnown RBP21.79■■□□□ 1.08
SHH-202ENST00000430104 LY9Q9HBG7 655 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 CCPG1Q9ULG6 757 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 SNX14Q9Y5W7 946 aa21.79■■□□□ 1.08
SHH-202ENST00000430104 MYH6P13533 1939 aa21.78■■□□□ 1.08
SHH-202ENST00000430104 POTEFA5A3E0 1075 aa21.78■■□□□ 1.08
SHH-202ENST00000430104 CCDC69A6NI79 296 aa21.78■■□□□ 1.08
SHH-202ENST00000430104 SH2B2O14492 632 aaPredicted RBP21.78■■□□□ 1.08
SHH-202ENST00000430104 ABRAQ8N0Z2 381 aa21.78■■□□□ 1.08
SHH-202ENST00000430104 DDX11Q96FC9 970 aa21.78■■□□□ 1.08
SHH-202ENST00000430104 JAKMIP1Q96N16 626 aaKnown RBP21.78■■□□□ 1.08
SHH-202ENST00000430104 TRERF1Q96PN7 1200 aa21.78■■□□□ 1.08
SHH-202ENST00000430104 RNF208Q9H0X6 261 aa21.78■■□□□ 1.08
SHH-202ENST00000430104 RNF146Q9NTX7 359 aa21.78■■□□□ 1.08
SHH-202ENST00000430104 FLRT1Q9NZU1 646 aa21.78■■□□□ 1.08
SHH-202ENST00000430104 CPA1P15085 419 aa21.77■■□□□ 1.08
SHH-202ENST00000430104 TRMT44Q8IYL2 757 aaKnown RBP21.77■■□□□ 1.08
SHH-202ENST00000430104 ADGRF4Q8IZF3 695 aa21.77■■□□□ 1.08
SHH-202ENST00000430104 ANKRD35Q8N283 1001 aa21.77■■□□□ 1.08
SHH-202ENST00000430104 CHST13Q8NET6 341 aa21.77■■□□□ 1.08
SHH-202ENST00000430104 MYL10Q9BUA6 226 aa21.77■■□□□ 1.08
SHH-202ENST00000430104 USP26Q9BXU7 913 aa21.77■■□□□ 1.08
SHH-202ENST00000430104 SLC5A4Q9NY91 659 aa21.77■■□□□ 1.08
SHH-202ENST00000430104 MAD2L2Q9UI95 211 aa21.77■■□□□ 1.08
SHH-202ENST00000430104 HTTP42858 3142 aa21.76■■□□□ 1.07
SHH-202ENST00000430104 KLRF2D3W0D1 207 aa21.76■■□□□ 1.07
SHH-202ENST00000430104 ICAM1P05362 532 aa21.76■■□□□ 1.07
SHH-202ENST00000430104 HOXC6P09630 235 aa21.76■■□□□ 1.07
SHH-202ENST00000430104 GRM4Q14833 912 aa21.76■■□□□ 1.07
SHH-202ENST00000430104 DHX32Q7L7V1 743 aaKnown RBP21.76■■□□□ 1.07
SHH-202ENST00000430104 RAB11FIP4Q86YS3 637 aa21.76■■□□□ 1.07
SHH-202ENST00000430104 ZNF654Q8IZM8 581 aa21.76■■□□□ 1.07
SHH-202ENST00000430104 KCNB2Q92953 911 aa21.76■■□□□ 1.07
SHH-202ENST00000430104 MTA3Q9BTC8 594 aa21.76■■□□□ 1.07
SHH-202ENST00000430104 ACAD9Q9H845 621 aa21.76■■□□□ 1.07
SHH-202ENST00000430104 FBXO40Q9UH90 709 aa21.76■■□□□ 1.07
SHH-202ENST00000430104 PRKAR2AP13861 404 aaKnown RBP21.75■■□□□ 1.07
SHH-202ENST00000430104 EXOSC10Q01780 885 aaKnown RBP21.75■■□□□ 1.07
SHH-202ENST00000430104 TKFCQ3LXA3 575 aa21.75■■□□□ 1.07
SHH-202ENST00000430104 MUM1L1Q5H9M0 696 aa21.75■■□□□ 1.07
SHH-202ENST00000430104 MFSD14CQ5VZR4 134 aa21.75■■□□□ 1.07
SHH-202ENST00000430104 TMTC2Q8N394 836 aa21.75■■□□□ 1.07
SHH-202ENST00000430104 RBBP6Q7Z6E9 1792 aaKnown RBP21.74■■□□□ 1.07
SHH-202ENST00000430104 PALM3A6NDB9 673 aaPredicted RBP21.74■■□□□ 1.07
SHH-202ENST00000430104 EN2P19622 333 aaPredicted RBP21.74■■□□□ 1.07
SHH-202ENST00000430104 RXRAP19793 462 aa21.74■■□□□ 1.07
SHH-202ENST00000430104 CYP2C19P33261 490 aa21.74■■□□□ 1.07
SHH-202ENST00000430104 CACNB2Q08289 660 aaPredicted RBP21.74■■□□□ 1.07
SHH-202ENST00000430104 TROAPQ12815 778 aa21.74■■□□□ 1.07
SHH-202ENST00000430104 CDC37Q16543 378 aaPredicted RBP21.74■■□□□ 1.07
SHH-202ENST00000430104 USH1GQ495M9 461 aa21.74■■□□□ 1.07
SHH-202ENST00000430104 HMX1Q9NP08 348 aaPredicted RBP21.74■■□□□ 1.07
SHH-202ENST00000430104 HMGB1P09429 215 aaKnown RBP21.73■■□□□ 1.07
SHH-202ENST00000430104 LIFRP42702 1097 aa21.73■■□□□ 1.07
SHH-202ENST00000430104 FGD1P98174 961 aa21.73■■□□□ 1.07
SHH-202ENST00000430104 ZNF792Q3KQV3 632 aa21.73■■□□□ 1.07
SHH-202ENST00000430104 BLOC1S2Q6QNY1 142 aa21.73■■□□□ 1.07
SHH-202ENST00000430104 CCDC144CPQ8IYA2 1237 aa21.73■■□□□ 1.07
SHH-202ENST00000430104 MAML3Q96JK9 1138 aa21.73■■□□□ 1.07
SHH-202ENST00000430104 JMJD4Q9H9V9 463 aa21.73■■□□□ 1.07
SHH-202ENST00000430104 SLC12A7Q9Y666 1083 aa21.73■■□□□ 1.07
SHH-202ENST00000430104 RPTORQ8N122 1335 aa21.73■■□□□ 1.07
SHH-202ENST00000430104 EPB41L2O43491 1005 aaKnown RBP21.72■■□□□ 1.07
SHH-202ENST00000430104 DDAH1O94760 285 aa21.72■■□□□ 1.07
SHH-202ENST00000430104 QRICH1Q2TAL8 776 aa21.72■■□□□ 1.07
SHH-202ENST00000430104 NSMFQ6X4W1 530 aa21.72■■□□□ 1.07
SHH-202ENST00000430104 CTCFLQ8NI51 663 aaPredicted RBP21.72■■□□□ 1.07
SHH-202ENST00000430104 DEFB118Q96PH6 123 aa21.72■■□□□ 1.07
SHH-202ENST00000430104 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.72■■□□□ 1.076e-7■■■■□ 21.6
SHH-202ENST00000430104 WDR19Q8NEZ3 1342 aa21.72■■□□□ 1.07
SHH-202ENST00000430104 BAZ2BQ9UIF8 2168 aaKnown RBP21.71■■□□□ 1.07
SHH-202ENST00000430104 CASTP20810 708 aaKnown RBP21.71■■□□□ 1.07
SHH-202ENST00000430104 PSMA5P28066 241 aa21.71■■□□□ 1.07
SHH-202ENST00000430104 CNGA1P29973 690 aa21.71■■□□□ 1.07
SHH-202ENST00000430104 CCND3P30281 292 aaPredicted RBP21.71■■□□□ 1.07
SHH-202ENST00000430104 OLFML2BQ68BL8 750 aa21.71■■□□□ 1.07
SHH-202ENST00000430104 SYNE3Q6ZMZ3 975 aa21.71■■□□□ 1.07
SHH-202ENST00000430104 HOMER1Q86YM7 354 aa21.71■■□□□ 1.07
SHH-202ENST00000430104 PIBF1Q8WXW3 757 aa21.71■■□□□ 1.07
SHH-202ENST00000430104 A1CFQ9NQ94 594 aaKnown RBP21.71■■□□□ 1.07
SHH-202ENST00000430104 NAP1L2Q9ULW6 460 aaPredicted RBP21.71■■□□□ 1.07
SHH-202ENST00000430104 GJB1P08034 283 aa21.7■■□□□ 1.06
SHH-202ENST00000430104 KIF5BP33176 963 aa21.7■■□□□ 1.06
SHH-202ENST00000430104 PRAMEF19Q5SWL8 479 aa21.7■■□□□ 1.06
SHH-202ENST00000430104 MAP3K21Q5TCX8 1036 aa21.7■■□□□ 1.06
SHH-202ENST00000430104 Q6ZUG5 572 aa21.7■■□□□ 1.06
SHH-202ENST00000430104 FBXO11Q86XK2 927 aa21.7■■□□□ 1.06
SHH-202ENST00000430104 PNMA2Q9UL42 364 aa21.7■■□□□ 1.06
SHH-202ENST00000430104 DIS3Q9Y2L1 958 aaKnown RBP21.7■■□□□ 1.06
SHH-202ENST00000430104 DNAJC25-GNG10A0A024R161 153 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms