RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 LRRC8AQ8IWT6 810 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 USP17L12C9JPN9 530 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 USP17L21D6R901 530 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 SNX1Q13596 522 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 SMIM5Q71RC9 77 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 AGBL3Q8NEM8 1001 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 CHAMP1Q96JM3 812 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 NHSQ6T4R5 1651 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 A0A0G2JLW4 131 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 IQCA1LA6NCM1 817 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 E7EWF7 191 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 WHAMMP3Q1A5X7 153 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 CCDC150Q8NCX0 1101 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 TATDN2Q93075 761 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 SCAND2PQ9GZW5 306 aaPredicted RBP10.92□□□□□ -0.66
USP54-205ENST00000424265 WDR19Q8NEZ3 1342 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 SALL1Q9NSC2 1324 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 RPS6KA5O75582 802 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 PARP1P09874 1014 aaKnown RBP10.92□□□□□ -0.66
USP54-205ENST00000424265 AOC3Q16853 763 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 APOBEC3FQ8IUX4 373 aaKnown RBP10.92□□□□□ -0.66
USP54-205ENST00000424265 CCDC43Q96MW1 224 aaKnown RBP10.92□□□□□ -0.66
USP54-205ENST00000424265 OSBPL9Q96SU4 736 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 MAF1Q9H063 256 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 FGAP02671 866 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 PYGLP06737 847 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 ARHGAP22Q7Z5H3 698 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 CACTINQ8WUQ7 758 aaKnown RBP10.91□□□□□ -0.66
USP54-205ENST00000424265 ZKSCAN4Q969J2 545 aaPredicted RBP10.91□□□□□ -0.66
USP54-205ENST00000424265 RRP36Q96EU6 259 aaKnown RBP10.91□□□□□ -0.66
USP54-205ENST00000424265 NAP1L4Q99733 375 aaKnown RBP10.91□□□□□ -0.66
USP54-205ENST00000424265 SAP30BPQ9UHR5 308 aaKnown RBP10.91□□□□□ -0.66
USP54-205ENST00000424265 NUB1Q9Y5A7 615 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 NDUFB9Q9Y6M9 179 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 DTNBP1Q96EV8 351 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 KLC4Q9NSK0 619 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 CRKP46108 304 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 GJA8P48165 433 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 TYRO3Q06418 890 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 APOBRQ0VD83 1088 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 CCDC38Q502W7 563 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 CCDC121Q6ZUS5 278 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 STRBPQ96SI9 672 aaKnown RBP10.91□□□□□ -0.66
USP54-205ENST00000424265 RGL1Q9NZL6 768 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 ZNF165P49910 485 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 SFSWAPQ12872 951 aaKnown RBP10.91□□□□□ -0.66
USP54-205ENST00000424265 ZNF280DQ6N043 979 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 ZNF274Q96GC6 653 aaPredicted RBP10.91□□□□□ -0.66
USP54-205ENST00000424265 TMOD4Q9NZQ9 345 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 PI4KBQ9UBF8 816 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 CNPY2Q9Y2B0 182 aa10.91□□□□□ -0.66
USP54-205ENST00000424265 RBM47A0AV96 593 aaKnown RBP10.9□□□□□ -0.66
USP54-205ENST00000424265 ANKRD33BA6NCL7 494 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 B4E1Z4 1266 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 ZNF189O75820 626 aaPredicted RBP10.9□□□□□ -0.66
USP54-205ENST00000424265 DDAH1O94760 285 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 AK2P54819 239 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 CCDC70Q6NSX1 233 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 OSBP2Q969R2 916 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 PYM1Q9BRP8 204 aaKnown RBP10.9□□□□□ -0.66
USP54-205ENST00000424265 RAB34Q9BZG1 259 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.9□□□□□ -0.66
USP54-205ENST00000424265 ZSWIM6Q9HCJ5 1215 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 PPP1R12BO60237 982 aaPredicted RBP10.9□□□□□ -0.66
USP54-205ENST00000424265 SCNN1DP51172 638 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 NLRP5P59047 1200 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 REXO1L1PQ8IX06 675 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 ADAMTS7Q9UKP4 1686 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 CCDC194A0A1B0GVG4 234 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 NDUFAB1O14561 156 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 RAD17O75943 681 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 THSD7AQ9UPZ6 1657 aa10.9□□□□□ -0.66
USP54-205ENST00000424265 GRIK3Q13003 919 aa10.9□□□□□ -0.67
USP54-205ENST00000424265 CKAP2LQ8IYA6 745 aa10.9□□□□□ -0.67
USP54-205ENST00000424265 FAM81AQ8TBF8 368 aa10.9□□□□□ -0.67
USP54-205ENST00000424265 BCAS4Q8TDM0 211 aa10.9□□□□□ -0.67
USP54-205ENST00000424265 ZSWIM4Q9H7M6 989 aa10.9□□□□□ -0.67
USP54-205ENST00000424265 CSADQ9Y600 493 aa10.9□□□□□ -0.67
USP54-205ENST00000424265 EME2A4GXA9 379 aaPredicted RBP10.89□□□□□ -0.67
USP54-205ENST00000424265 M0R2C6 588 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 TBC1D8O95759 1140 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 IL1R1P14778 569 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 LMNB1P20700 586 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 GJB2P29033 226 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 CFAP100Q494V2 611 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 ATL3Q6DD88 541 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 EZH1Q92800 747 aaPredicted RBP10.89□□□□□ -0.67
USP54-205ENST00000424265 RANBP17Q9H2T7 1088 aaKnown RBP10.89□□□□□ -0.67
USP54-205ENST00000424265 RABEP2Q9H5N1 569 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 SERPINA10Q9UK55 444 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 GOLGA6L10A0A0M3HER8 536 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 ZRANB2O95218 330 aaKnown RBP eCLIP10.89□□□□□ -0.67
USP54-205ENST00000424265 GNA11P29992 359 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 SLC8A3P57103 927 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 TRIM58Q8NG06 486 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 MMADHCQ9H3L0 296 aaPredicted RBP10.89□□□□□ -0.67
USP54-205ENST00000424265 UNC45AQ9H3U1 944 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 SERPINB13Q9UIV8 391 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 ZMYM6O95789 1325 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 MYSM1Q5VVJ2 828 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms