RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 ZNF543Q08ER8 600 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 PRAMEF19Q5SWL8 479 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 SYDE2Q5VT97 1194 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 LHX8Q68G74 356 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 KIAA1211Q6ZU35 1233 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 CYB5R4Q7L1T6 521 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 PNMA1Q8ND90 353 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 CHST13Q8NET6 341 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 DIS3LQ8TF46 1054 aaKnown RBP17.39■□□□□ 0.37
LIMS4-201ENST00000413601 ANKS1AQ92625 1134 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 UBAC1Q9BSL1 405 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 KAT14Q9H8E8 782 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 OGDHLQ9ULD0 1010 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 DIS3Q9Y2L1 958 aaKnown RBP17.39■□□□□ 0.37
LIMS4-201ENST00000413601 RBM8AQ9Y5S9 174 aaKnown RBP17.39■□□□□ 0.37
LIMS4-201ENST00000413601 LCTP09848 1927 aa17.39■□□□□ 0.37
LIMS4-201ENST00000413601 E7EWF7 191 aa17.38■□□□□ 0.37
LIMS4-201ENST00000413601 GOLGA8HP0CJ92 632 aa17.38■□□□□ 0.37
LIMS4-201ENST00000413601 ALAS1P13196 640 aa17.38■□□□□ 0.37
LIMS4-201ENST00000413601 TRDNQ13061 729 aa17.38■□□□□ 0.37
LIMS4-201ENST00000413601 PPP4R3CPQ6ZMV5 832 aa17.38■□□□□ 0.37
LIMS4-201ENST00000413601 ANKRD35Q8N283 1001 aa17.38■□□□□ 0.37
LIMS4-201ENST00000413601 ANKLE1Q8NAG6 615 aa17.38■□□□□ 0.37
LIMS4-201ENST00000413601 PAWRQ96IZ0 340 aaKnown RBP17.38■□□□□ 0.37
LIMS4-201ENST00000413601 LSG1Q9H089 658 aaKnown RBP17.38■□□□□ 0.37
LIMS4-201ENST00000413601 RANBP17Q9H2T7 1088 aaKnown RBP17.38■□□□□ 0.37
LIMS4-201ENST00000413601 FBXO40Q9UH90 709 aa17.38■□□□□ 0.37
LIMS4-201ENST00000413601 DNAJC25-GNG10A0A024R161 153 aa17.37■□□□□ 0.37
LIMS4-201ENST00000413601 TAL1P17542 331 aaPredicted RBP17.37■□□□□ 0.37
LIMS4-201ENST00000413601 MNX1P50219 401 aaPredicted RBP17.37■□□□□ 0.37
LIMS4-201ENST00000413601 STOX1Q6ZVD7 989 aa17.37■□□□□ 0.37
LIMS4-201ENST00000413601 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.37■□□□□ 0.37
LIMS4-201ENST00000413601 TRERF1Q96PN7 1200 aa17.37■□□□□ 0.37
LIMS4-201ENST00000413601 TINF2Q9BSI4 451 aa17.37■□□□□ 0.37
LIMS4-201ENST00000413601 RNF146Q9NTX7 359 aa17.37■□□□□ 0.37
LIMS4-201ENST00000413601 DDX20Q9UHI6 824 aaKnown RBP17.37■□□□□ 0.37
LIMS4-201ENST00000413601 CCPG1Q9ULG6 757 aa17.37■□□□□ 0.37
LIMS4-201ENST00000413601 SEC23AQ15436 765 aa17.36■□□□□ 0.37
LIMS4-201ENST00000413601 TKFCQ3LXA3 575 aa17.36■□□□□ 0.37
LIMS4-201ENST00000413601 IFIT1BQ5T764 474 aaKnown RBP17.36■□□□□ 0.37
LIMS4-201ENST00000413601 PRPF38BQ5VTL8 546 aaKnown RBP17.36■□□□□ 0.37
LIMS4-201ENST00000413601 NCOA7Q8NI08 942 aa17.36■□□□□ 0.37
LIMS4-201ENST00000413601 CPVLQ9H3G5 476 aa17.36■□□□□ 0.37
LIMS4-201ENST00000413601 ACAD9Q9H845 621 aa17.36■□□□□ 0.37
LIMS4-201ENST00000413601 ICAM1P05362 532 aa17.35■□□□□ 0.37
LIMS4-201ENST00000413601 MUM1L1Q5H9M0 696 aa17.35■□□□□ 0.37
LIMS4-201ENST00000413601 GPATCH4Q5T3I0 446 aaKnown RBP17.35■□□□□ 0.37
LIMS4-201ENST00000413601 ANO1Q5XXA6 986 aa17.35■□□□□ 0.37
LIMS4-201ENST00000413601 CHST3Q7LGC8 479 aa17.35■□□□□ 0.37
LIMS4-201ENST00000413601 NECAB2Q7Z6G3 386 aa17.35■□□□□ 0.37
LIMS4-201ENST00000413601 RALYLQ86SE5 291 aaKnown RBP17.35■□□□□ 0.37
LIMS4-201ENST00000413601 DPF3Q92784 378 aa17.35■□□□□ 0.37
LIMS4-201ENST00000413601 HTATIP2Q9BUP3 242 aa17.35■□□□□ 0.37
LIMS4-201ENST00000413601 UBA5Q9GZZ9 404 aa17.35■□□□□ 0.37
LIMS4-201ENST00000413601 ANO2Q9NQ90 1003 aa17.35■□□□□ 0.37
LIMS4-201ENST00000413601 SEPT4O43236 478 aa17.34■□□□□ 0.37
LIMS4-201ENST00000413601 MSCO60682 206 aa17.34■□□□□ 0.37
LIMS4-201ENST00000413601 HOXD11P31277 338 aaPredicted RBP17.34■□□□□ 0.37
LIMS4-201ENST00000413601 CNTN2Q02246 1040 aa17.34■□□□□ 0.37
LIMS4-201ENST00000413601 A1CFQ9NQ94 594 aaKnown RBP17.34■□□□□ 0.37
LIMS4-201ENST00000413601 IFIT3O14879 490 aaKnown RBP17.33■□□□□ 0.36
LIMS4-201ENST00000413601 CDC45O75419 566 aa17.33■□□□□ 0.36
LIMS4-201ENST00000413601 CENPBP07199 599 aaPredicted RBP17.33■□□□□ 0.36
LIMS4-201ENST00000413601 PARP1P09874 1014 aaKnown RBP17.33■□□□□ 0.36
LIMS4-201ENST00000413601 MAMDC4Q6UXC1 1216 aa17.33■□□□□ 0.36
LIMS4-201ENST00000413601 FGD4Q96M96 766 aa17.33■□□□□ 0.36
LIMS4-201ENST00000413601 SENP2Q9HC62 589 aa17.33■□□□□ 0.36
LIMS4-201ENST00000413601 PFASO15067 1338 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 SYNGAP1Q96PV0 1343 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 ERICH2A1L162 156 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 POTEB2H3BUK9 544 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 SLC27A2O14975 620 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 SNAI1O95863 264 aaPredicted RBP17.32■□□□□ 0.36
LIMS4-201ENST00000413601 ANTXR2P58335 489 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 NECTIN1Q15223 517 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 ASPRV1Q53RT3 343 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 CASC1Q6TDU7 716 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 ZNF467Q7Z7K2 595 aaPredicted RBP17.32■□□□□ 0.36
LIMS4-201ENST00000413601 MB21D2Q8IYB1 491 aaPredicted RBP17.32■□□□□ 0.36
LIMS4-201ENST00000413601 MSL3Q8N5Y2 521 aaKnown RBP17.32■□□□□ 0.36
LIMS4-201ENST00000413601 FAM133AQ8N9E0 248 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 C11orf49Q9H6J7 331 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 NRBP1Q9UHY1 535 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 CNPY2Q9Y2B0 182 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 LRRC37A2A6NM11 1700 aa17.32■□□□□ 0.36
LIMS4-201ENST00000413601 BAZ2BQ9UIF8 2168 aaKnown RBP17.31■□□□□ 0.36
LIMS4-201ENST00000413601 ZNF865P0CJ78 1059 aaPredicted RBP17.31■□□□□ 0.36
LIMS4-201ENST00000413601 WTAPQ15007 396 aa17.31■□□□□ 0.36
LIMS4-201ENST00000413601 CREB3L3Q68CJ9 461 aa17.31■□□□□ 0.36
LIMS4-201ENST00000413601 NSMFQ6X4W1 530 aa17.31■□□□□ 0.36
LIMS4-201ENST00000413601 ADGRF4Q8IZF3 695 aa17.31■□□□□ 0.36
LIMS4-201ENST00000413601 STAG2Q8N3U4 1231 aa17.31■□□□□ 0.36
LIMS4-201ENST00000413601 PPP4R2Q9NY27 417 aa17.31■□□□□ 0.36
LIMS4-201ENST00000413601 CYP39A1Q9NYL5 469 aa17.31■□□□□ 0.36
LIMS4-201ENST00000413601 SOWAHBA6NEL2 793 aa17.3■□□□□ 0.36
LIMS4-201ENST00000413601 H0YGN5 161 aa17.3■□□□□ 0.36
LIMS4-201ENST00000413601 NFIBO00712 420 aa17.3■□□□□ 0.36
LIMS4-201ENST00000413601 COL6A1P12109 1028 aa17.3■□□□□ 0.36
LIMS4-201ENST00000413601 SART3Q15020 963 aaKnown RBP17.3■□□□□ 0.36
LIMS4-201ENST00000413601 TMEM67Q5HYA8 995 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms