RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 MYH4Q9Y623 1939 aa15.38■□□□□ 0.05
LIMS1-205ENST00000410093 DYNC1I1O14576 645 aa15.38■□□□□ 0.05
LIMS1-205ENST00000410093 SFPQP23246 707 aaKnown RBP eCLIP15.38■□□□□ 0.05
LIMS1-205ENST00000410093 CRKP46108 304 aa15.38■□□□□ 0.05
LIMS1-205ENST00000410093 E2F4Q16254 413 aa15.38■□□□□ 0.05
LIMS1-205ENST00000410093 SLC4A8Q2Y0W8 1093 aa15.38■□□□□ 0.05
LIMS1-205ENST00000410093 MCTP2Q6DN12 878 aa15.38■□□□□ 0.05
LIMS1-205ENST00000410093 APOBEC3HQ6NTF7 200 aaKnown RBP15.38■□□□□ 0.05
LIMS1-205ENST00000410093 SLC51AQ86UW1 340 aa15.38■□□□□ 0.05
LIMS1-205ENST00000410093 EPSTI1Q96J88 318 aa15.38■□□□□ 0.05
LIMS1-205ENST00000410093 CTAGE1Q96RT6 745 aa15.38■□□□□ 0.05
LIMS1-205ENST00000410093 VPS33BQ9H267 617 aa15.38■□□□□ 0.05
LIMS1-205ENST00000410093 SMCO2A6NFE2 343 aa15.37■□□□□ 0.05
LIMS1-205ENST00000410093 SKILP12757 684 aa15.37■□□□□ 0.05
LIMS1-205ENST00000410093 LMOD1P29536 600 aaPredicted RBP15.37■□□□□ 0.05
LIMS1-205ENST00000410093 PPP1R2P41236 205 aa15.37■□□□□ 0.05
LIMS1-205ENST00000410093 FSTL1Q12841 308 aa15.37■□□□□ 0.05
LIMS1-205ENST00000410093 CCDC144BQ3MJ40 725 aa15.37■□□□□ 0.05
LIMS1-205ENST00000410093 PDILTQ8N807 584 aa15.37■□□□□ 0.05
LIMS1-205ENST00000410093 GPKOWQ92917 476 aaPredicted RBP eCLIP15.37■□□□□ 0.05
LIMS1-205ENST00000410093 HSD3B7Q9H2F3 369 aa15.37■□□□□ 0.05
LIMS1-205ENST00000410093 PI4KBQ9UBF8 816 aa15.37■□□□□ 0.05
LIMS1-205ENST00000410093 PAXBP1Q9Y5B6 917 aa15.37■□□□□ 0.05
LIMS1-205ENST00000410093 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.36■□□□□ 0.05
LIMS1-205ENST00000410093 ZNF18P17022 549 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 BMP6P22004 513 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 PICALMQ13492 652 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 DOK7Q18PE1 504 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 DACT2Q5SW24 774 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 SPATA1Q5VX52 437 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 PDXDC2PQ6P474 469 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 FILIP1Q7Z7B0 1213 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 NEK8Q86SG6 692 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 REXO1Q8N1G1 1221 aaKnown RBP15.36■□□□□ 0.05
LIMS1-205ENST00000410093 SMC1BQ8NDV3 1235 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 MYRIPQ8NFW9 859 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 MKL1Q969V6 931 aa15.36■□□□□ 0.05
LIMS1-205ENST00000410093 A0A087WWV3 80 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 PNMA6FA0A0J9YX94 578 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 IQCA1LA6NCM1 817 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 DDNO94850 711 aaPredicted RBP15.35■□□□□ 0.05
LIMS1-205ENST00000410093 SHMT1P34896 483 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 GTF2F1P35269 517 aaKnown RBP eCLIP15.35■□□□□ 0.05
LIMS1-205ENST00000410093 UBA7P41226 1012 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 ZNF543Q08ER8 600 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 CFAP100Q494V2 611 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 USP17L2Q6R6M4 530 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 USP49Q70CQ1 688 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 VSTM4Q8IW00 320 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 DISC1Q9NRI5 854 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 FANCLQ9NW38 375 aa15.35■□□□□ 0.05
LIMS1-205ENST00000410093 F8W031 263 aaPredicted RBP15.34■□□□□ 0.05
LIMS1-205ENST00000410093 FOXN1O15353 648 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 SLC26A4O43511 780 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 ECE2O60344 883 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 ENTPD3O75355 529 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 PRR29P0C7W0 189 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 AKR1B1P15121 316 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 CDK11BP21127 795 aaKnown RBP15.34■□□□□ 0.05
LIMS1-205ENST00000410093 APLP1P51693 650 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 EIF6P56537 245 aaKnown RBP15.34■□□□□ 0.05
LIMS1-205ENST00000410093 SPAG1Q07617 926 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 KCNB1Q14721 858 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 SLC35G1Q2M3R5 365 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 ISM2Q6H9L7 571 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 TYW1BQ6NUM6 668 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 TMC6Q7Z403 805 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 FCHSD1Q86WN1 690 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 LARGE2Q8N3Y3 721 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 DCAF4Q8WV16 495 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 CCDC47Q96A33 483 aaKnown RBP15.34■□□□□ 0.05
LIMS1-205ENST00000410093 TRIM34Q9BYJ4 488 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 RAB34Q9BZG1 259 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 KANSL2Q9H9L4 492 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 DDX4Q9NQI0 724 aaKnown RBP15.34■□□□□ 0.05
LIMS1-205ENST00000410093 NYAP2Q9P242 653 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 NFE2L3Q9Y4A8 694 aa15.34■□□□□ 0.05
LIMS1-205ENST00000410093 DICER1Q9UPY3 1922 aaKnown RBP15.34■□□□□ 0.05
LIMS1-205ENST00000410093 ATRNL1Q5VV63 1379 aa15.33■□□□□ 0.05
LIMS1-205ENST00000410093 A0A087X0B3 334 aa15.33■□□□□ 0.05
LIMS1-205ENST00000410093 USP17L5A8MUK1 530 aa15.33■□□□□ 0.05
LIMS1-205ENST00000410093 OR52Z1P0C646 297 aa15.33■□□□□ 0.05
LIMS1-205ENST00000410093 STAT6P42226 847 aa15.33■□□□□ 0.05
LIMS1-205ENST00000410093 ADCY7P51828 1080 aa15.33■□□□□ 0.05
LIMS1-205ENST00000410093 CCZ1BP86790 482 aa15.33■□□□□ 0.05
LIMS1-205ENST00000410093 CCZ1P86791 482 aaPredicted RBP15.33■□□□□ 0.05
LIMS1-205ENST00000410093 LRMPQ12912 555 aa15.33■□□□□ 0.05
LIMS1-205ENST00000410093 INF2Q27J81 1249 aa15.33■□□□□ 0.05
LIMS1-205ENST00000410093 RRAGBQ5VZM2 374 aa15.33■□□□□ 0.05
LIMS1-205ENST00000410093 MTERF4Q7Z6M4 381 aaKnown RBP15.33■□□□□ 0.05
LIMS1-205ENST00000410093 WNT7AO00755 349 aa15.33■□□□□ 0.04
LIMS1-205ENST00000410093 GOLGA8HP0CJ92 632 aa15.33■□□□□ 0.04
LIMS1-205ENST00000410093 AFMP43652 599 aa15.33■□□□□ 0.04
LIMS1-205ENST00000410093 MRPL12P52815 198 aaKnown RBP15.33■□□□□ 0.04
LIMS1-205ENST00000410093 AMPD3Q01432 767 aa15.33■□□□□ 0.04
LIMS1-205ENST00000410093 TRAF1Q13077 416 aa15.33■□□□□ 0.04
LIMS1-205ENST00000410093 CUL4BQ13620 913 aa15.33■□□□□ 0.04
LIMS1-205ENST00000410093 TPD52L1Q16890 204 aaPredicted RBP15.33■□□□□ 0.04
LIMS1-205ENST00000410093 FILIP1LQ4L180 1135 aa15.33■□□□□ 0.04
LIMS1-205ENST00000410093 NOM1Q5C9Z4 860 aaKnown RBP15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms